View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17601_high_1 (Length: 419)
Name: NF17601_high_1
Description: NF17601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17601_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 20140698 - 20140309
Alignment:
| Q |
19 |
tgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaaacacgtgtttggaagactgtgaatgatattagta |
118 |
Q |
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| T |
20140698 |
tgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaaacacgtgtttggaagactgtgaatgatattagta |
20140599 |
T |
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| Q |
119 |
atcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagaggatttggttatcatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140598 |
atcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagaggatttggttatcatga |
20140499 |
T |
|
| Q |
219 |
tgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgcttgaatcattctttctctt |
318 |
Q |
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| T |
20140498 |
tgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgcttgaatcattctttctctt |
20140399 |
T |
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| Q |
319 |
tattttgtaatttttatgttctgtctttt-atatgggaagaaatatctcatacgagagtagtatttattggcctttgtattttgtatctc |
407 |
Q |
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| T |
20140398 |
tattttgtaatttttatgttctgtcttttaatatgggaagaaatatctcatacgagagtagtatttattggcatttgtattttgtatctc |
20140309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 44318113 - 44317724
Alignment:
| Q |
19 |
tgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaaacacgtgtttggaagactgtgaatgatattagta |
118 |
Q |
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| T |
44318113 |
tgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaaacacgtgtttggaagactgtgaatgatattagta |
44318014 |
T |
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| Q |
119 |
atcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagaggatttggttatcatga |
218 |
Q |
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| T |
44318013 |
atcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagaggatttggttatcatga |
44317914 |
T |
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| Q |
219 |
tgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgcttgaatcattctttctctt |
318 |
Q |
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| T |
44317913 |
tgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgcttgaatcattctttctctt |
44317814 |
T |
|
| Q |
319 |
tattttgtaatttttatgttctgtctttt-atatgggaagaaatatctcatacgagagtagtatttattggcctttgtattttgtatctc |
407 |
Q |
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| T |
44317813 |
tattttgtaatttttatgttctgtcttttaatatgggaagaaatatctcatacgagagtagtatttattggcatttgtattttgtatctc |
44317724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 214 - 332
Target Start/End: Complemental strand, 29632351 - 29632234
Alignment:
| Q |
214 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgcttgaatcattcttt |
313 |
Q |
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||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||| |
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| T |
29632351 |
catgatgatcgtgaacctgttgtttgtacttatgtttgtgacaatggtcatgtttctggtgcttggactgatttacctatgtacatttg-atcattcttt |
29632253 |
T |
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| Q |
314 |
ctctttattttgtaatttt |
332 |
Q |
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|||||||||||||| |||| |
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| T |
29632252 |
ctctttattttgtattttt |
29632234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 29632181 - 29632116
Alignment:
| Q |
337 |
ttctgtcttttatatgggaagaaatatctcatacgagagtagtatttattggcctttgtattttgt |
402 |
Q |
| |
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|||| ||||| ||||||||||||| |||||||| |||||||||| ||||| || |||||||||||| |
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| T |
29632181 |
ttctttctttaatatgggaagaaagatctcatatgagagtagtacttatttgcatttgtattttgt |
29632116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 333
Target Start/End: Complemental strand, 16320450 - 16320332
Alignment:
| Q |
214 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgcttgaatcattcttt |
313 |
Q |
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||||||||||||||||||| |||| | |||||||||| |||||||| || |||||||||| |||||||||| |||||||||| ||| || |||| || |
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| T |
16320450 |
catgatgatggtgaacctgatgtttgtgcttatgtttctgataatgatcgagtttctggtgattggactgatgagcctatgtacactt-cattattcatt |
16320352 |
T |
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| Q |
314 |
ctctttattttgtaattttt |
333 |
Q |
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||||||||| |||| ||||| |
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| T |
16320351 |
ctctttattctgtatttttt |
16320332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 16321573 - 16321519
Alignment:
| Q |
348 |
atatgggaagaaatatctcatacgagagtagtatttattggcctttgtattttgt |
402 |
Q |
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|||||||||||||||||||||| |||||||||||||||| || |||||||||||| |
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| T |
16321573 |
atatgggaagaaatatctcatatgagagtagtatttatttgcatttgtattttgt |
16321519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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