View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17601_high_3 (Length: 400)
Name: NF17601_high_3
Description: NF17601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17601_high_3 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 44314386 - 44313999
Alignment:
| Q |
7 |
atatgtcgggtagctccagcggctaccacccatttgttcacatcagtcacaatgtttgcttcagcaatgactgcagcaataatgtcatcatctccttcag |
106 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44314386 |
atatgtcgggtagctccagagtctaccacccatttgttcacatcagtcacaatgtttgcttcagcaataactgcagcaataatgtcatcatctccttcag |
44314287 |
T |
|
| Q |
107 |
ccacattagcttcaggaggattctcattcttctttcggtgtctgcactgaggtgcatagtgacctatcttaccacatacataacagtgtcctccatttcc |
206 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44314286 |
ccaaattggcttcaggaggattctcattcttctttcggtgtctgcactgaggtgcatagtgacctatcttaccacatacataacaatgtcctccatttcc |
44314187 |
T |
|
| Q |
207 |
atttttgaaagtgggattagtaacacgaggaacataattatttttattgtgaccagatttacgattaggtttgttatcatacctccttttctgattagtg |
306 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314186 |
atttgtgaaagtgggattagtaacacgaggaacatgattatttttatagtgaccagatttacgattaggtttgttatcatacctccttttctgattagtg |
44314087 |
T |
|
| Q |
307 |
ttgttctggatcagatttgcttgggaagctaaagccctggccttggtagccctgctctcctttcggttggtatcctctatgatgatgt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
44314086 |
ttgttctggatcagatttgcttgggaagctaaagccctggccttggcagccctgctctcctttcggttggtattctctatgatgatgt |
44313999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 34098506 - 34098893
Alignment:
| Q |
7 |
atatgtcgggtagctccagcggctaccacccatttgttcacatcagtcacaatgtttgcttcagcaatgactgcagcaataatgtcatcatctccttcag |
106 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34098506 |
atatgtcgggtagctccagagtctaccacccatttgttcacatcagtcacaatgtttgcttcagcaataactgcagcaataatgtcatcatctccttcag |
34098605 |
T |
|
| Q |
107 |
ccacattagcttcaggaggattctcattcttctttcggtgtctgcactgaggtgcatagtgacctatcttaccacatacataacagtgtcctccatttcc |
206 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34098606 |
ccaaattggcttcaggaggattctcattcttctttcggtgtctgcactgaggtgcatagtgacctatcttaccacatacataacaatgtcctccatttcc |
34098705 |
T |
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| Q |
207 |
atttttgaaagtgggattagtaacacgaggaacataattatttttattgtgaccagatttacgattaggtttgttatcatacctccttttctgattagtg |
306 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098706 |
atttgtgaaagtgggattagtaacacgaggaacatgattatttttatagtgaccagatttacgattaggtttgttatcatacctccttttctgattagtg |
34098805 |
T |
|
| Q |
307 |
ttgttctggatcagatttgcttgggaagctaaagccctggccttggtagccctgctctcctttcggttggtatcctctatgatgatgt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
34098806 |
ttgttctggatcagatttgcttgggaagctaaagccctggccttggcagccctgctctcctttcggttggtattctctatgatgatgt |
34098893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 40186 - 40565
Alignment:
| Q |
7 |
atatgtcgggtagctccagcggctaccacccatttgttcacatcagtcacaatgtttgcttcagcaatgactgcagcaataatgtcatcatctccttcag |
106 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40186 |
atatgtcgggtagctccagagtctaccacccatttgttcacatcagtcacaatatttgcttcagcaatgactgcagcaataatgttatcatctccttcag |
40285 |
T |
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| Q |
107 |
ccacattagcttcaggaggattctcattcttctttcggtgtctgcactgaggtgcatagtgacctatcttaccacatacataacagtgtcctccatttcc |
206 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40286 |
ccaaattagcttcaggaggattctcattcttctttcggtgtctgcactgaggtgcatagtgacctttcttaccacatacataacagtgtcctccatttcc |
40385 |
T |
|
| Q |
207 |
atttttgaaagtgggattagtaacacgaggaacataattatttttattgtgaccagatttacgattaggtttgttatcatacctccttttctgattagtg |
306 |
Q |
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||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||| |
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| T |
40386 |
attttcgaaagagggattagtaacacgaggaacatgattatttttattgtgaccaggtttatgattaggtttgttatcatacctctttttctaattagtg |
40485 |
T |
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| Q |
307 |
ttgttctggatcagatttgcttgggaagctaaagccctggccttggtagccctgctctcctttcggttggtatcctctat |
386 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |
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| T |
40486 |
ttgttttggatcagatttgcttgggaagctaaagccctggctttggcagccctgctctcctttaggttggtatcctctat |
40565 |
T |
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