View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17601_high_5 (Length: 347)
Name: NF17601_high_5
Description: NF17601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17601_high_5 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 44314347 - 44314667
Alignment:
| Q |
13 |
tgaacaaatgggtggtagactctggagctacccgacatatatgtgctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314347 |
tgaacaaatgggtggtagactctggagctacccgacatatatgtgctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggt |
44314446 |
T |
|
| Q |
113 |
ttaccttggtgactctcaaactgctgctgtttcgggaaaagggaaagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacat |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314447 |
ttaccttggtgactctcgaactgctgctgtttcgggaaaagggaaagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacat |
44314546 |
T |
|
| Q |
213 |
gtgcctaatataaggaccaatctgatttcagtggctcttttgagcaagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagata |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314547 |
gtgcctaatataaggaccaatctggtttcagtggctcttttgagcaagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagata |
44314646 |
T |
|
| Q |
313 |
atgtatttgtggggaaaggtt |
333 |
Q |
| |
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||||||||||||||||||||| |
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| T |
44314647 |
atgtatttgtggggaaaggtt |
44314667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 34098545 - 34098225
Alignment:
| Q |
13 |
tgaacaaatgggtggtagactctggagctacccgacatatatgtgctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098545 |
tgaacaaatgggtggtagactctggagctacccgacatatatgtgctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggt |
34098446 |
T |
|
| Q |
113 |
ttaccttggtgactctcaaactgctgctgtttcgggaaaagggaaagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacat |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098445 |
ttaccttggtgactctcgaactgctgctgtttcgggaaaagggaaagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacat |
34098346 |
T |
|
| Q |
213 |
gtgcctaatataaggaccaatctgatttcagtggctcttttgagcaagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagata |
312 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098345 |
gtgcctaatataaggaccaatctggtttcagtggctcttttgagcaagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagata |
34098246 |
T |
|
| Q |
313 |
atgtatttgtggggaaaggtt |
333 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
34098245 |
atgtatttgtggggaaaggtt |
34098225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 40225 - 39905
Alignment:
| Q |
13 |
tgaacaaatgggtggtagactctggagctacccgacatatatgtgctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40225 |
tgaacaaatgggtggtagactctggagctacccgacatatatgtgctactaaggatgccttcacctcctacaatattgtgggggatggagaagaactggt |
40126 |
T |
|
| Q |
113 |
ttaccttggtgactctcaaactgctgctgtttcgggaaaagggaaagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacat |
212 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
40125 |
ttaccttggtgactctcgaactgctgctttttcgggaaaagggaaagttatgttgaagctcacatcagaaaagaccttggctttaagtgatgtcttacat |
40026 |
T |
|
| Q |
213 |
gtgcctaatataaggaccaatctgatttcagtggctcttttgagcaagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagata |
312 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
40025 |
gtgcctaatataaggaccaatctaatttcagtggctcgtttgagcaagggtgggattaaagtgtcatttgagtctaacaagattgtaatgacaaaagata |
39926 |
T |
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| Q |
313 |
atgtatttgtggggaaaggtt |
333 |
Q |
| |
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||||||||||||||||||||| |
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| T |
39925 |
atgtatttgtggggaaaggtt |
39905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 19430289 - 19430333
Alignment:
| Q |
263 |
tgggattaaagtgtcatttgaatctgacaagattgtaatgacaaa |
307 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
19430289 |
tggggttaatgtgtcatttgaatctgacaagattgtaatgacaaa |
19430333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 41397517 - 41397476
Alignment:
| Q |
266 |
gattaaagtgtcatttgaatctgacaagattgtaatgacaaa |
307 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||||| |
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| T |
41397517 |
gattaaagtgtcatttaaatctgacaagattgtaacgacaaa |
41397476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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