View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17601_high_7 (Length: 304)
Name: NF17601_high_7
Description: NF17601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17601_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 20140698 - 20140423
Alignment:
| Q |
19 |
tgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaaacacgtgtttggaagactgtgaatgatattagta |
118 |
Q |
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| T |
20140698 |
tgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaaacacgtgtttggaagactgtgaatgatattagta |
20140599 |
T |
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| Q |
119 |
atcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagaggatttggttatcatga |
218 |
Q |
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| T |
20140598 |
atcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagaggatttggttatcatga |
20140499 |
T |
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| Q |
219 |
tgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
294 |
Q |
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| T |
20140498 |
tgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
20140423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 44318113 - 44317838
Alignment:
| Q |
19 |
tgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaaacacgtgtttggaagactgtgaatgatattagta |
118 |
Q |
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| T |
44318113 |
tgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaaacacgtgtttggaagactgtgaatgatattagta |
44318014 |
T |
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| Q |
119 |
atcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagaggatttggttatcatga |
218 |
Q |
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| T |
44318013 |
atcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagaggatttggttatcatga |
44317914 |
T |
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| Q |
219 |
tgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
294 |
Q |
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| T |
44317913 |
tgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
44317838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 29632351 - 29632271
Alignment:
| Q |
214 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
294 |
Q |
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| T |
29632351 |
catgatgatcgtgaacctgttgtttgtacttatgtttgtgacaatggtcatgtttctggtgcttggactgatttacctatg |
29632271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 16320450 - 16320370
Alignment:
| Q |
214 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
294 |
Q |
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| T |
16320450 |
catgatgatggtgaacctgatgtttgtgcttatgtttctgataatgatcgagtttctggtgattggactgatgagcctatg |
16320370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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