View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17601_low_10 (Length: 242)

Name: NF17601_low_10
Description: NF17601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17601_low_10
NF17601_low_10
[»] chr5 (32 HSPs)
chr5 (17-212)||(5660210-5660406)
chr5 (107-211)||(26900021-26900126)
chr5 (97-146)||(32487386-32487435)
chr5 (97-146)||(624188-624237)
chr5 (97-142)||(5723912-5723957)
chr5 (105-146)||(15370099-15370140)
chr5 (97-146)||(27502153-27502202)
chr5 (98-146)||(41170627-41170675)
chr5 (144-211)||(6500537-6500604)
chr5 (144-211)||(15370186-15370253)
chr5 (96-146)||(6500442-6500491)
chr5 (146-216)||(36492216-36492286)
chr5 (97-146)||(623810-623859)
chr5 (97-146)||(6500815-6500863)
chr5 (97-146)||(9498771-9498820)
chr5 (105-146)||(12662769-12662810)
chr5 (105-146)||(35150747-35150788)
chr5 (105-146)||(35151038-35151079)
chr5 (146-211)||(40296319-40296384)
chr5 (144-212)||(34753028-34753096)
chr5 (102-146)||(36492334-36492378)
chr5 (144-191)||(795256-795303)
chr5 (144-211)||(6500909-6500976)
chr5 (156-211)||(27502040-27502095)
chr5 (160-211)||(41632885-41632936)
chr5 (105-143)||(40296435-40296473)
chr5 (105-146)||(13415877-13415918)
chr5 (97-146)||(18603237-18603286)
chr5 (106-146)||(299490-299530)
chr5 (144-216)||(33747858-33747930)
chr5 (144-208)||(35150093-35150157)
chr5 (144-211)||(42405602-42405667)
[»] chr2 (26 HSPs)
chr2 (97-146)||(14745411-14745460)
chr2 (144-220)||(37106275-37106350)
chr2 (97-146)||(5542742-5542791)
chr2 (101-146)||(37105920-37105965)
chr2 (97-146)||(37106180-37106229)
chr2 (95-146)||(41283592-41283643)
chr2 (97-146)||(5543115-5543164)
chr2 (97-146)||(14745784-14745833)
chr2 (97-146)||(36178386-36178435)
chr2 (97-146)||(36178722-36178771)
chr2 (144-220)||(15880350-15880425)
chr2 (105-146)||(31468863-31468904)
chr2 (105-146)||(36785680-36785721)
chr2 (144-208)||(6422197-6422261)
chr2 (144-204)||(40163383-40163443)
chr2 (111-146)||(40733889-40733924)
chr2 (97-146)||(1769884-1769933)
chr2 (146-211)||(6421474-6421539)
chr2 (97-146)||(7598601-7598650)
chr2 (105-146)||(16542449-16542490)
chr2 (144-209)||(36178611-36178676)
chr2 (105-146)||(37632714-37632755)
chr2 (105-146)||(37894809-37894850)
chr2 (105-146)||(38796335-38796376)
chr2 (113-141)||(3672727-3672755)
chr2 (144-208)||(36005887-36005951)
[»] chr3 (27 HSPs)
chr3 (96-146)||(51886552-51886602)
chr3 (97-146)||(22304238-22304287)
chr3 (97-146)||(50612569-50612618)
chr3 (144-211)||(3135458-3135525)
chr3 (144-211)||(15772941-15773008)
chr3 (144-211)||(35946609-35946676)
chr3 (96-146)||(37726495-37726545)
chr3 (97-146)||(22304561-22304610)
chr3 (97-146)||(39389062-39389111)
chr3 (144-211)||(22303663-22303730)
chr3 (144-211)||(37990643-37990710)
chr3 (144-211)||(43346795-43346862)
chr3 (97-146)||(4823647-4823696)
chr3 (105-146)||(15773192-15773233)
chr3 (105-146)||(25739542-25739583)
chr3 (105-146)||(33803369-33803410)
chr3 (111-146)||(11661541-11661576)
chr3 (144-211)||(29644906-29644973)
chr3 (144-211)||(41359495-41359562)
chr3 (144-211)||(42342094-42342161)
chr3 (144-211)||(42342392-42342459)
chr3 (112-146)||(3135190-3135224)
chr3 (161-211)||(8328374-8328424)
chr3 (105-146)||(8327904-8327945)
chr3 (105-146)||(43346650-43346691)
chr3 (144-208)||(22304656-22304720)
chr3 (144-216)||(37990976-37991048)
[»] scaffold0702 (1 HSPs)
scaffold0702 (97-146)||(259-308)
[»] chr8 (27 HSPs)
chr8 (97-146)||(3670052-3670101)
chr8 (144-207)||(6651581-6651644)
chr8 (144-214)||(3670147-3670217)
chr8 (97-146)||(1013988-1014037)
chr8 (97-146)||(3669679-3669728)
chr8 (97-146)||(6731896-6731945)
chr8 (97-146)||(30441073-30441122)
chr8 (144-220)||(18371989-18372065)
chr8 (144-211)||(5915954-5916021)
chr8 (97-146)||(41416288-41416335)
chr8 (105-146)||(45122027-45122068)
chr8 (105-146)||(45123006-45123047)
chr8 (144-208)||(30441172-30441236)
chr8 (111-146)||(3038407-3038442)
chr8 (144-207)||(3669774-3669837)
chr8 (155-214)||(9482605-9482664)
chr8 (111-146)||(18372488-18372523)
chr8 (111-146)||(18380134-18380169)
chr8 (144-214)||(9483188-9483258)
chr8 (144-214)||(30359358-30359428)
chr8 (97-146)||(1014362-1014411)
chr8 (105-146)||(9309355-9309396)
chr8 (144-209)||(40579512-40579577)
chr8 (105-146)||(45122174-45122215)
chr8 (147-211)||(6876866-6876930)
chr8 (160-220)||(18372279-18372339)
chr8 (160-208)||(40579276-40579324)
[»] chr6 (29 HSPs)
chr6 (97-146)||(2378118-2378167)
chr6 (97-146)||(26544041-26544090)
chr6 (97-146)||(29518495-29518544)
chr6 (97-146)||(29518912-29518961)
chr6 (97-146)||(32741171-32741220)
chr6 (97-146)||(3058218-3058267)
chr6 (97-146)||(3409251-3409300)
chr6 (97-146)||(14748455-14748504)
chr6 (97-146)||(35210196-35210245)
chr6 (144-211)||(1846835-1846902)
chr6 (161-220)||(16108155-16108214)
chr6 (144-211)||(29518590-29518657)
chr6 (144-211)||(29519007-29519074)
chr6 (144-211)||(32741266-32741333)
chr6 (144-214)||(2579493-2579563)
chr6 (92-146)||(3415445-3415499)
chr6 (108-146)||(9062466-9062504)
chr6 (97-146)||(1127352-1127401)
chr6 (97-146)||(3409652-3409701)
chr6 (144-211)||(2578447-2578514)
chr6 (160-211)||(3409763-3409814)
chr6 (144-211)||(16454662-16454729)
chr6 (144-211)||(16454994-16455061)
chr6 (111-146)||(32460697-32460732)
chr6 (144-211)||(35210291-35210358)
chr6 (105-146)||(2579989-2580030)
chr6 (144-205)||(3409346-3409407)
chr6 (160-205)||(26544152-26544197)
chr6 (105-137)||(33605975-33606007)
[»] chr4 (28 HSPs)
chr4 (144-217)||(1731643-1731716)
chr4 (97-146)||(49880152-49880201)
chr4 (97-148)||(55933237-55933288)
chr4 (97-146)||(41370349-41370398)
chr4 (97-146)||(50788098-50788147)
chr4 (144-211)||(44621089-44621156)
chr4 (144-211)||(50630757-50630824)
chr4 (96-146)||(6975571-6975621)
chr4 (108-146)||(20826220-20826258)
chr4 (154-211)||(43827536-43827593)
chr4 (97-146)||(50630870-50630919)
chr4 (105-146)||(52884695-52884736)
chr4 (105-146)||(52884887-52884928)
chr4 (160-211)||(22028371-22028422)
chr4 (144-211)||(25483423-25483490)
chr4 (111-146)||(36572025-36572060)
chr4 (144-211)||(36629324-36629391)
chr4 (144-211)||(39792862-39792929)
chr4 (144-211)||(44620440-44620507)
chr4 (144-211)||(44620746-44620813)
chr4 (105-146)||(1731762-1731803)
chr4 (105-146)||(25483336-25483377)
chr4 (164-216)||(16889533-16889585)
chr4 (97-133)||(18932888-18932924)
chr4 (96-128)||(18933103-18933135)
chr4 (105-145)||(44620660-44620700)
chr4 (102-146)||(50002423-50002467)
chr4 (144-216)||(50459808-50459880)
[»] chr1 (22 HSPs)
chr1 (97-146)||(3537264-3537313)
chr1 (97-146)||(44290575-44290624)
chr1 (97-146)||(44290942-44290991)
chr1 (97-146)||(41759475-41759524)
chr1 (97-146)||(44043895-44043943)
chr1 (97-146)||(45494095-45494145)
chr1 (97-146)||(3550712-3550761)
chr1 (97-146)||(48588605-48588654)
chr1 (96-133)||(50051781-50051818)
chr1 (97-146)||(50052140-50052189)
chr1 (144-211)||(44290828-44290896)
chr1 (144-211)||(3537603-3537670)
chr1 (144-211)||(14318954-14319021)
chr1 (99-146)||(32594833-32594880)
chr1 (144-211)||(45084463-45084530)
chr1 (97-146)||(3537716-3537765)
chr1 (105-146)||(34364507-34364548)
chr1 (105-146)||(41142372-41142413)
chr1 (105-146)||(41184542-41184583)
chr1 (105-145)||(37850718-37850758)
chr1 (102-146)||(38804472-38804516)
chr1 (106-146)||(40082408-40082448)
[»] chr7 (18 HSPs)
chr7 (158-211)||(37533015-37533068)
chr7 (97-146)||(37533127-37533176)
chr7 (99-146)||(29157559-29157606)
chr7 (144-207)||(36939741-36939804)
chr7 (105-146)||(1085733-1085774)
chr7 (105-146)||(7554025-7554066)
chr7 (97-146)||(14681502-14681551)
chr7 (105-146)||(36622960-36623001)
chr7 (111-147)||(30032573-30032609)
chr7 (144-211)||(11845278-11845345)
chr7 (99-142)||(14681281-14681324)
chr7 (160-211)||(37167884-37167935)
chr7 (144-211)||(37533368-37533435)
chr7 (144-211)||(47129456-47129523)
chr7 (105-146)||(7517580-7517621)
chr7 (105-146)||(36939850-36939891)
chr7 (105-146)||(40094891-40094932)
chr7 (105-146)||(40230408-40230449)
[»] scaffold0027 (1 HSPs)
scaffold0027 (156-211)||(47459-47514)
[»] scaffold0734 (2 HSPs)
scaffold0734 (105-146)||(5396-5437)
scaffold0734 (105-146)||(5777-5818)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 5660210 - 5660406
Alignment:
Q  17 aatatgttggagatgatgttatatagtgtataacccatcattatttgtaattttaaggaatatagttcaaatctaacctatgttggtttgcaaatgtgag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5660210 aatatgttggagatgatgttatatagtgtataacccatcattatttgtaattttaaggaatatagttcaaatctcacctatgttggtttgcaaatgtgag 5660309  T
Q  117 ttatatgtcccacatcgaataaaatagtaaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctc-aatgtggacggtt 212  Q
    |||||||| |||||||||||||||||||| |||||| ||||||||| |||||||| ||||| ||||| | ||||| || |||| |||||||||||||    
T  5660310 ttatatgttccacatcgaataaaatagtatggttttggataaaagtatggtgtttttcttgtttgtgtggttgttctagcctcaaatgtggacggtt 5660406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 26900126 - 26900021
Alignment:
Q  107 caaatgtgagttatatgtcccacatcgaataaaatagt-aaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtg 205  Q
    ||||| ||||||||||||||||||||  |||||| ||| |||||||| | ||| |||||||||| ||||||||||||| | ||||| || |||  |||||    
T  26900126 caaatttgagttatatgtcccacatcagataaaagagttaaggttttgggtaagagtgtggtgtctctcttgcttgtgggtttgttctagccttgatgtg 26900027  T
Q  206 gacggt 211  Q
    ||||||    
T  26900026 gacggt 26900021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 32487386 - 32487435
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  32487386 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 32487435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 624188 - 624237
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  624188 tgttggtttgcaagtgtgagttatatgtcccacattgtataaaatagtaa 624237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 5723957 - 5723912
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaata 142  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  5723957 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaata 5723912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 15370099 - 15370140
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  15370099 tgcaagtgtgagttatatgtcccacatcgaataaaatagtaa 15370140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 27502202 - 27502153
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  27502202 tgttggtttgcaagtgtgagttatatgtcccacattggataaaatagtaa 27502153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 41170627 - 41170675
Alignment:
Q  98 gttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  41170627 gttggtttgtaattgtgagttatatgtcccacatcggataaaatagtaa 41170675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 6500537 - 6500604
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  6500537 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 6500604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 15370186 - 15370253
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||| ||||||| || |||| |||||||||||    
T  15370186 taaggttttgggtaagagtgtggtgtctctcttgcttgtgggattgttctagcctcgatgtggacggt 15370253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 6500442 - 6500491
Alignment:
Q  96 atgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  6500442 atgttggtttgcaagtgtgagttatatgt-ccacatcggataaaatagtaa 6500491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 36492286 - 36492216
Alignment:
Q  146 aggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctc 216  Q
    ||||||| ||||| |||||||||| ||||||||||||| | ||||| || |||| ||||||||||| ||||    
T  36492286 aggttttggataagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtccctc 36492216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 623810 - 623859
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  623810 tgttggtttgcaagtgtgagttatatgtctcacatcggatataatagtaa 623859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 6500815 - 6500863
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  6500815 tgttggtttgcaagtgtgagttatatgt-ccacatcggataaaatagtaa 6500863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 9498820 - 9498771
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||||||||||||||||||| ||||||  ||| ||||||||    
T  9498820 tgttggtttgcaaatgtgagttatatgtctcacatcagatagaatagtaa 9498771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 12662810 - 12662769
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  12662810 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 12662769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 35150747 - 35150788
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  35150747 tgcaagtgtgagttatatgtcccacatcgaataaaagagtaa 35150788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 35151038 - 35151079
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  35151038 tgcaagtgtgagttatatgtcccacatcgaataaaagagtaa 35151079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 40296384 - 40296319
Alignment:
Q  146 aggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  40296384 aggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 40296319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 34753096 - 34753028
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggtt 212  Q
    ||||||||| | ||| ||||||| || ||||||||||||||| ||||| || |||| ||||||||||||    
T  34753096 taaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtt 34753028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 36492378 - 36492334
Alignment:
Q  102 gtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||    
T  36492378 gtttgcaagtgtgagttatatgtcccacatcggataaaagagtaa 36492334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 795303 - 795256
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgtt 191  Q
    ||||||||||| ||| |||||||||| ||||||||||||||| |||||    
T  795303 taaggttttaggtaagagtgtggtgtctctcttgcttgtgcggttgtt 795256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 6500909 - 6500976
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| ||||| |||||||||| |||||| |||||||| || || || |||| |||||||||||    
T  6500909 taaggttttggataagagtgtggtgtctctcttacttgtgcggttattctagcctcgatgtggacggt 6500976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 27502095 - 27502040
Alignment:
Q  156 taaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    |||||||||||||| ||||||||||||| | ||||| || |||| |||||||||||    
T  27502095 taaaagtgtggtgtctctcttgcttgtgtggttgttctatcctcgatgtggacggt 27502040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 41632885 - 41632936
Alignment:
Q  160 agtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    |||||||||| ||||||||||||||| ||||||||  ||| |||||||||||    
T  41632885 agtgtggtgtctctcttgcttgtgcggttgttttagtctcgatgtggacggt 41632936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 40296473 - 40296435
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatag 143  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  40296473 tgcaagtgtgagttatatgtcccacatcggataaaatag 40296435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 13415918 - 13415877
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||    
T  13415918 tgcaagtgtgagttatatgtcccacatcggataaattagtaa 13415877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 18603286 - 18603237
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||| |||| ||| ||||||||||||||||||||||  ||||||||||||    
T  18603286 tgttagttttcaagtgtgagttatatgtcccacatcagataaaatagtaa 18603237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 299490 - 299530
Alignment:
Q  106 gcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||| ||||||||||||||||||||||| |||||| |||||    
T  299490 gcaagtgtgagttatatgtcccacatcggataaaacagtaa 299530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 33747858 - 33747930
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctc 216  Q
    |||| |||| ||||| |||||||||| |||||| ||| |||| ||||| || |||  ||||||||||||||||    
T  33747858 taagattttggataagagtgtggtgtctctcttccttatgcggttgttctagccttgatgtggacggttcctc 33747930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 35150093 - 35150157
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggac 208  Q
    ||||||||| | |||||||||||||| |||||  || ||| | ||||| ||||||||||||||||    
T  35150093 taaggttttgggtaaaagtgtggtgtctctctcactagtgtggttgttctaacctcaatgtggac 35150157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 42405667 - 42405602
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| ||||||||||  |||||||||||||| ||||| || |||| |||||||||||    
T  42405667 taaggttttgggtaagagtgtggtgt--ctcttgcttgtgcggttgttctagcctcgatgtggacggt 42405602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 14745460 - 14745411
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14745460 tgttggtttgcaactgtgagttatatgtcccacatcgaataaaatagtaa 14745411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 37106275 - 37106350
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctccgag 220  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||    
T  37106275 taaggttttgggtaagagtgtggtgtttctcttgcttgtgcgattgttctagcctcgatgtggacgg-tcctccgag 37106350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 5542791 - 5542742
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  5542791 tgttggtttgcaagtgtgagttatatgtcccatatcgaataaaatagtaa 5542742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 37105920 - 37105965
Alignment:
Q  101 ggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  37105920 ggtttgcaagtgtgagttatatgtcccacatcgaataaaatagtaa 37105965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 37106180 - 37106229
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  37106180 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 37106229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 41283643 - 41283592
Alignment:
Q  95 tatgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  41283643 tatgttggtttgcaagtgtgagttatatgtcccatatcggataaaatagtaa 41283592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 5543164 - 5543115
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  5543164 tgttggtttgcaagtgtgagttatatgtcccacatccgataaaatagtaa 5543115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 14745833 - 14745784
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  14745833 tgttggtttgcaagtgtgagttatatgtcccacattggataaaatagtaa 14745784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 36178435 - 36178386
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  36178435 tgttggtttgcaagtgtgagttatatgtcccacttcggataaaatagtaa 36178386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 36178771 - 36178722
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  36178771 tgttagtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 36178722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 15880350 - 15880425
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctccgag 220  Q
    ||||||||| | ||| ||||||| || ||||||||||||||| |||||||| |||| |||||||| |||||||||||    
T  15880350 taaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttttagcctcgatgtggac-gttcctccgag 15880425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 31468904 - 31468863
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  31468904 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 31468863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 36785721 - 36785680
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  36785721 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 36785680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 6422197 - 6422261
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggac 208  Q
    ||||||||||| ||| |||||||||| ||||||||||||| | ||||| || |||| ||||||||    
T  6422197 taaggttttaggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggac 6422261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 40163443 - 40163383
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgt 204  Q
    ||||||||| | |||||||||||||| ||||||||||||| | ||||| ||||||| ||||    
T  40163443 taaggttttgggtaaaagtgtggtgtctctcttgcttgtgtggttgttctaacctcgatgt 40163383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 40733889 - 40733924
Alignment:
Q  111 tgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||||||||||||||||||| |||||    
T  40733889 tgtgagttatatgtcccacatcgaataaaagagtaa 40733924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 1769884 - 1769933
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||| ||||| ||||||||||||||| ||||||| |||||| |||||    
T  1769884 tgttggtgtgcaagtgtgagttatatgtcacacatcggataaaagagtaa 1769933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 6421474 - 6421539
Alignment:
Q  146 aggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||| | ||| |||||||||| ||||||||||||||| ||||| ||  ||| |||||||||||    
T  6421474 aggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagtctcgatgtggacggt 6421539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 7598601 - 7598650
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||| ||||| ||||||||||||||||||||||  |||||| |||||    
T  7598601 tgttggtgtgcaagtgtgagttatatgtcccacatcagataaaaaagtaa 7598650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 16542449 - 16542490
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||    
T  16542449 tgcaagtgtgagttataagtcccacatcggataaaatagtaa 16542490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 36178676 - 36178611
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacg 209  Q
    ||||||||| | ||| |||||||||| ||||||||||||| | ||||| || |||| |||||||||    
T  36178676 taaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctctatgtggacg 36178611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 37632755 - 37632714
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| |||||||||||||||| |||||| ||||||||||||    
T  37632755 tgcaagtgtgagttatatgtcctacatcggataaaatagtaa 37632714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 37894850 - 37894809
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||||||||||||||||| ||||| || |||||    
T  37894850 tgcaaatgtgagttatatgtcccacattgaatagaaaagtaa 37894809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 38796376 - 38796335
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| |||||| |||||    
T  38796376 tgcaagtgtgagttatatgtcccacatcggataaaacagtaa 38796335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 3672727 - 3672755
Alignment:
Q  113 tgagttatatgtcccacatcgaataaaat 141  Q
    |||||||||||||||||||||||||||||    
T  3672727 tgagttatatgtcccacatcgaataaaat 3672755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 36005951 - 36005887
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggac 208  Q
    ||||||||| | ||||||||||| || ||||||||||||| | ||||| || |||| ||||||||    
T  36005951 taaggttttgggtaaaagtgtggcgtctctcttgcttgtggggttgttctagcctcgatgtggac 36005887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 51886552 - 51886602
Alignment:
Q  96 atgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  51886552 atgttggtttgcaagtgtgagttatatgtctcacatcgaataaaatagtaa 51886602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 22304238 - 22304287
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  22304238 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 22304287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 50612618 - 50612569
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  50612618 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 50612569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 3135525 - 3135458
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||||||||| |||||||||| ||| ||||||||||| ||||| || |||| |||||||||||    
T  3135525 taaggttttagataagagtgtggtgtctcttttgcttgtgcggttgttctagcctcgatgtggacggt 3135458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 15772941 - 15773008
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| ||||| |||||||||| ||||||||||||| | ||||| ||||||| |||||||||||    
T  15772941 taaggttttggataagagtgtggtgtctctcttgcttgtgtggttgttctaacctcgatgtggacggt 15773008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 35946609 - 35946676
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | |||||||||||||| |||||||||||||| |||||| || |||| |||||||||||    
T  35946609 taaggttttgggtaaaagtgtggtgtctctcttgcttgtgcaattgttctagcctcgatgtggacggt 35946676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 37726495 - 37726545
Alignment:
Q  96 atgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  37726495 atgttggtttgcaagtgtgagttatatgtctcacatcggataaaatagtaa 37726545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 22304561 - 22304610
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  22304561 tgttggtttgcaagtgtgagctatatgtcccacatcggataaaatagtaa 22304610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 39389062 - 39389111
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  39389062 tgttggtttgcaagtgtgagttatatgtcctacatcggataaaatagtaa 39389111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 22303730 - 22303663
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| ||||||||||||||||| |||||||||||||| || |||| |||| ||||||    
T  22303730 taaggttttgggtaagagtgtggtgtttctcttacttgtgcgattgttctagcctcgatgtagacggt 22303663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 37990710 - 37990643
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||| ||||||| || |||| |||||||||||    
T  37990710 taaggttttgggtaagagtgtggtgtctctcttgcttgtgtgattgttctagcctcgatgtggacggt 37990643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 43346862 - 43346795
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  43346862 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctctatgtggacggt 43346795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 4823647 - 4823696
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||| ||| ||||||| ||||||||||||    
T  4823647 tgttggtttgcaagtgtgagttataagtctcacatcggataaaatagtaa 4823696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 15773192 - 15773233
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  15773192 tgcaagtgtgagttatatgtcccacatcgaataaaagagtaa 15773233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 25739583 - 25739542
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  25739583 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 25739542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 33803410 - 33803369
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  33803410 tgcaattgtgagttatatgtcccacatcggataaaatagtaa 33803369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 11661541 - 11661576
Alignment:
Q  111 tgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11661541 tgtgagttatatgtcccacatcggataaaatagtaa 11661576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 29644973 - 29644906
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| ||||||| || |||||||||| |||| |||||||| |||| |||||||||||    
T  29644973 taaggttttgggtaagagtgtggcgtctctcttgcttatgcggttgttttagcctcgatgtggacggt 29644906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 41359562 - 41359495
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| ||||||| || ||| ||||||||||| ||||| || ||||||||||||||||    
T  41359562 taaggttttgggtaagagtgtggcgtctcttttgcttgtgcggttgttctagcctcaatgtggacggt 41359495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 42342161 - 42342094
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| ||||||| || ||||||||||||||| ||||| || |||| |||||||||||    
T  42342161 taaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 42342094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 42342459 - 42342392
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| ||||||  || ||||||||||||||| ||||| || ||||||||||||||||    
T  42342459 taaggttttgggtaagagtgtgacgtctctcttgcttgtgcggttgttctagcctcaatgtggacggt 42342392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 3135224 - 3135190
Alignment:
Q  112 gtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||||||||||| ||||||||||||    
T  3135224 gtgagttatatgtcccacatcggataaaatagtaa 3135190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 8328374 - 8328424
Alignment:
Q  161 gtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| ||||||||||||| | |||||||| |||| |||||||||||    
T  8328374 gtgtggtgtctctcttgcttgtggggttgttttagcctcgatgtggacggt 8328424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 8327904 - 8327945
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| |||||| |||||    
T  8327904 tgcaagtgtgagttatatgtcccacatcggataaaagagtaa 8327945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 43346650 - 43346691
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| |||||||| |||||||||||||| ||||||||||||    
T  43346650 tgcaagtgtgagttgtatgtcccacatcggataaaatagtaa 43346691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 22304656 - 22304720
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggac 208  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| ||  ||| ||||||||    
T  22304656 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagtctcgatgtggac 22304720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 37991048 - 37990976
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctc 216  Q
    ||||||||| | ||| |||||||||| |||||||||| || | ||||| || |||| ||||||||||| ||||    
T  37991048 taaggttttgggtaagagtgtggtgtctctcttgcttatgtggttgttctagcctcgatgtggacggtccctc 37990976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 308 - 259
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  308 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3670052 - 3670101
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  3670052 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 3670101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 6651581 - 6651644
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtgga 207  Q
    ||||||||| | ||| |||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  6651581 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcgattgttctaacctcgatgtgga 6651644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 3670147 - 3670217
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcc 214  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| ||||||||||||||    
T  3670147 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggttcc 3670217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 1014037 - 1013988
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  1014037 tgttggtttgcaagtgtgagttatatgttccacatcggataaaatagtaa 1013988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3669679 - 3669728
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  3669679 tgttggtttgcaagtgtgagttatatgtcccacatcagataaaatagtaa 3669728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 6731896 - 6731945
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||||||    
T  6731896 tgttgttttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 6731945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 30441073 - 30441122
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  30441073 tgttggtttgcaagtgtgagttatatgtcccacatcggctaaaatagtaa 30441122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 18372065 - 18371989
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctccgag 220  Q
    ||||||||| | ||| |||||||||||||||| ||||||||| ||| | || |||||||||| |||||||| |||||    
T  18372065 taaggttttgggtaagagtgtggtgtttctctcgcttgtgcggttgctctagcctcaatgtgaacggttcccccgag 18371989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 5915954 - 5916021
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  5915954 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 5916021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 41416335 - 41416288
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  41416335 tgttggtttgcaa--gtgagttatatgtcccacatcggataaaatagtaa 41416288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 45122068 - 45122027
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  45122068 tgcaagtgtgagttatatgtcccacatcgcataaaatagtaa 45122027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 45123006 - 45123047
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  45123006 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 45123047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 30441172 - 30441236
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggac 208  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| ||||||||    
T  30441172 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggac 30441236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 3038442 - 3038407
Alignment:
Q  111 tgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3038442 tgtgagttatatgtcccacatcggataaaatagtaa 3038407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 3669774 - 3669837
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtgga 207  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| |||||||    
T  3669774 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtgga 3669837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 9482664 - 9482605
Alignment:
Q  155 ataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcc 214  Q
    |||| |||||||| | ||||||||||||||| ||||| || |||| ||||||||||||||    
T  9482664 ataagagtgtggtatctctcttgcttgtgcggttgttctagcctcgatgtggacggttcc 9482605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 18372523 - 18372488
Alignment:
Q  111 tgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||||||||||||| ||||||||||||    
T  18372523 tgtgagttatatgtcccacatcggataaaatagtaa 18372488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 18380169 - 18380134
Alignment:
Q  111 tgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||| |||||||||||||||||||||||    
T  18380169 tgtgagttatatatcccacatcgaataaaatagtaa 18380134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 9483258 - 9483188
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcc 214  Q
    ||||||||| | ||| |||||||||| ||| ||||| ||||| ||||| || |||| ||||||||||||||    
T  9483258 taaggttttgggtaagagtgtggtgtctcttttgctcgtgcggttgttctagcctcgatgtggacggttcc 9483188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 30359358 - 30359428
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcc 214  Q
    ||||||||| | ||| |||||||||| |||||| ||||||   |||||||| |||||||||||| ||||||    
T  30359358 taaggttttgggtaagagtgtggtgtctctctttcttgtgatgttgttttagcctcaatgtggatggttcc 30359428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 1014411 - 1014362
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||||||||||  |||||  ||||||||||||    
T  1014411 tgttggtttgcaagtgtgagttatatgtcatacatcagataaaatagtaa 1014362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 9309355 - 9309396
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| |||||| |||||    
T  9309355 tgcaagtgtgagttatatgtcccacatcggataaaagagtaa 9309396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 40579577 - 40579512
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacg 209  Q
    ||||||||||| ||| |||||||||| ||| |||||||| || ||||| || |||| |||||||||    
T  40579577 taaggttttaggtaagagtgtggtgtctctattgcttgtacggttgttctatcctcgatgtggacg 40579512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 45122215 - 45122174
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||    
T  45122215 tgcaagtgtgagttatatgtctcacatcggataaaatagtaa 45122174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 6876930 - 6876866
Alignment:
Q  147 ggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    |||||| | ||| |||||||||||||||||| ||||| | ||||| || |||| |||||||||||    
T  6876930 ggttttgggtaagagtgtggtgtttctcttgtttgtgtggttgttctagcctcgatgtggacggt 6876866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 18372339 - 18372279
Alignment:
Q  160 agtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctccgag 220  Q
    |||||||||| ||||| ||||||||| ||| ||||  ||| |||||||||||||| |||||    
T  18372339 agtgtggtgtctctctcgcttgtgcggttgctttagtctcgatgtggacggttcccccgag 18372279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 40579324 - 40579276
Alignment:
Q  160 agtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggac 208  Q
    |||||||||| ||||||||||||||| ||||| || |||| ||||||||    
T  40579324 agtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggac 40579276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 2378118 - 2378167
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  2378118 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 2378167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 26544041 - 26544090
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  26544041 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 26544090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 29518495 - 29518544
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  29518495 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 29518544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 29518912 - 29518961
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  29518912 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 29518961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 32741171 - 32741220
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  32741171 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 32741220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3058218 - 3058267
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  3058218 tgttggtttgcaagtgttagttatatgtcccacatcggataaaatagtaa 3058267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3409251 - 3409300
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  3409251 tgttggtttgcaagtgtgagttatatgtcccacatcagataaaatagtaa 3409300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 14748504 - 14748455
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||||||    
T  14748504 tgttgatttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 14748455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 35210196 - 35210245
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  35210196 tgttggtttgcaagtgtgagttatatgtctcacatcggataaaatagtaa 35210245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 1846835 - 1846902
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| ||||| |||||||||| ||| ||||||||||| ||||| || |||| |||||||||||    
T  1846835 taaggttttggataagagtgtggtgtctcttttgcttgtgcggttgttctagcctcgatgtggacggt 1846902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 16108155 - 16108214
Alignment:
Q  161 gtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctccgag 220  Q
    ||||||||| ||||||||||||| | ||||| ||||||| ||||||||||| ||||||||    
T  16108155 gtgtggtgtctctcttgcttgtggggttgttataacctcgatgtggacggtccctccgag 16108214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 29518590 - 29518657
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  29518590 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 29518657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 29519007 - 29519074
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  29519007 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 29519074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 32741266 - 32741333
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  32741266 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 32741333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 2579563 - 2579493
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcc 214  Q
    ||||||||| | ||||||| |||||| ||||||||||||| | ||||| ||||||| ||||||| ||||||    
T  2579563 taaggttttgggtaaaagtatggtgtctctcttgcttgtgtggttgttctaacctcgatgtggatggttcc 2579493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 3415445 - 3415499
Alignment:
Q  92 acctatgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||| ||||||||||| | ||||||||||||||||||||||  ||||||||||||    
T  3415445 acctgtgttggtttgcgagtgtgagttatatgtcccacatcacataaaatagtaa 3415499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 9062504 - 9062466
Alignment:
Q  108 aaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  9062504 aaatgtgagttatatgtcccacatcggataaaatagtaa 9062466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 1127352 - 1127401
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||||||| ||||||||||  |||||||||||    
T  1127352 tgttggtttgcaactgtgagttatatatcccacatcgggtaaaatagtaa 1127401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3409652 - 3409701
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||||||||| |||||||  ||||||||||||    
T  3409652 tgttggtttgcaagtgtgagttatatgtaccacatcagataaaatagtaa 3409701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 2578514 - 2578447
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||| ||||||||||| ||||| || |||| |||||||||||    
T  2578514 taaggttttgggtaagagtgtggtgtctcttttgcttgtgcggttgttctagcctcgatgtggacggt 2578447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 3409763 - 3409814
Alignment:
Q  160 agtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  3409763 agtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 3409814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 16454662 - 16454729
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    |||| |||| ||||| ||||||| || ||||||||||||||| ||||| || |||| |||||||||||    
T  16454662 taagattttggataagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 16454729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 16454994 - 16455061
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| ||||||| || ||||||||||||||| ||||| || |||| |||||||||||    
T  16454994 taaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 16455061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 32460732 - 32460697
Alignment:
Q  111 tgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32460732 tgtgagttatatgtcccacatcgtataaaatagtaa 32460697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 35210291 - 35210358
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||||||| ||||||||||| ||| | || |||| |||||||||||    
T  35210291 taaggttttgggtaagagtgtggtgtttcttttgcttgtgcggttgctctagcctcgatgtggacggt 35210358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 2580030 - 2579989
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| |||||| |||||    
T  2580030 tgcaagtgtgagttatatgtcccacatcggataaaagagtaa 2579989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 3409346 - 3409407
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtg 205  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||||| || |||| |||||    
T  3409346 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtg 3409407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 26544152 - 26544197
Alignment:
Q  160 agtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtg 205  Q
    |||||| ||| ||||||||||||||||||||| || ||||||||||    
T  26544152 agtgtgatgtctctcttgcttgtgcgattgttctagcctcaatgtg 26544197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 33605975 - 33606007
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaata 137  Q
    ||||||||| |||||||||||||||||||||||    
T  33605975 tgcaaatgtaagttatatgtcccacatcgaata 33606007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 1731716 - 1731643
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctcc 217  Q
    ||||||||| | ||| |||||||||||||||||||||||| | ||||| || |||||||||||||||| |||||    
T  1731716 taaggttttgggtaagagtgtggtgtttctcttgcttgtgtggttgttctagcctcaatgtggacggtccctcc 1731643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 49880152 - 49880201
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  49880152 tgttggtttgcaagtgtgagttatatgtcccacattgaataaaatagtaa 49880201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 55933288 - 55933237
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaagg 148  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  55933288 tgttggtttgcaagtgtgagttatatgtcctacatcggataaaatagtaagg 55933237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 41370349 - 41370398
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  41370349 tgttggtttgcaagtgtgagttatatgtcccaaatcggataaaatagtaa 41370398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 50788147 - 50788098
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  50788147 tgttggtttgcaagtgtaagttatatgtcccacatcggataaaatagtaa 50788098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 44621089 - 44621156
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||||||||||||||||||| || || || |||| |||||||||||    
T  44621089 taaggttttgggtaagagtgtggtgtttctcttgcttgtgcggttattctagcctcgatgtggacggt 44621156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 50630824 - 50630757
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| |||||||| |||| |||||| ||||    
T  50630824 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttttagcctcgatgtgggcggt 50630757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 6975621 - 6975571
Alignment:
Q  96 atgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| |||||||||||||||||||||||| ||||||  ||||||||||||    
T  6975621 atgttagtttgcaaatgtgagttatatgtctcacatccgataaaatagtaa 6975571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 20826220 - 20826258
Alignment:
Q  108 aaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  20826220 aaatgtgagttatatgtcccacatcggataaaatagtaa 20826258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 43827536 - 43827593
Alignment:
Q  154 gataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||| |||||||||| |||||| |||||||| ||||| ||||||| |||||||||||    
T  43827536 gataagagtgtggtgtctctcttacttgtgcggttgttctaacctcgatgtggacggt 43827593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 50630919 - 50630870
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||  ||||||||||||||| |||||| ||||||||||||    
T  50630919 tgttggtttgcaagcgtgagttatatgtcctacatcggataaaatagtaa 50630870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 52884695 - 52884736
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  52884695 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 52884736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 52884887 - 52884928
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  52884887 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 52884928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 22028422 - 22028371
Alignment:
Q  160 agtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    |||||||||| ||||||||||||| | ||||| || ||||||||||||||||    
T  22028422 agtgtggtgtctctcttgcttgtgaggttgttctagcctcaatgtggacggt 22028371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 25483423 - 25483490
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||| | ||||| || |||| |||||||||||    
T  25483423 taaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggacggt 25483490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 36572025 - 36572060
Alignment:
Q  111 tgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||||||||||||||||||||||| |||||    
T  36572025 tgtgagttatatgtcccacatcgaataaaagagtaa 36572060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 36629324 - 36629391
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||| | ||||| || |||| |||||||||||    
T  36629324 taaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggacggt 36629391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 39792929 - 39792862
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||| | ||||| || |||| |||||||||||    
T  39792929 taaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggacggt 39792862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 44620440 - 44620507
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||| ||||||||||||||||| | ||||| ||||||  |||||||||||    
T  44620440 taaggttttgggtaagagtgtgatgtttctcttgcttgtgtggttgttctaaccttgatgtggacggt 44620507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 44620746 - 44620813
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||| | ||||||||||||||| ||||| || |||| |||||||||||    
T  44620746 taaggttttgggtaagagtgtggtttctctcttgcttgtgcggttgttatatcctcgatgtggacggt 44620813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 1731803 - 1731762
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||||||||||||||||||  |||||| |||||    
T  1731803 tgcaaatgtgagttatatgtcccacatcagataaaacagtaa 1731762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 25483336 - 25483377
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||    
T  25483336 tgcaagtgtgagttatatgtctcacatcggataaaatagtaa 25483377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 16889585 - 16889533
Alignment:
Q  164 tggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctc 216  Q
    |||||| |||||| |||||| ||||||| ||||||| ||||||||||| ||||    
T  16889585 tggtgtctctcttccttgtgtgattgttctaacctcgatgtggacggtccctc 16889533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 18932924 - 18932888
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcg 133  Q
    ||||||||||||| | |||||||||||||||||||||    
T  18932924 tgttggtttgcaagtctgagttatatgtcccacatcg 18932888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 18933135 - 18933103
Alignment:
Q  96 atgttggtttgcaaatgtgagttatatgtccca 128  Q
    |||||||||||||| ||||||||||||||||||    
T  18933135 atgttggtttgcaagtgtgagttatatgtccca 18933103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 44620660 - 44620700
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagta 145  Q
    ||||| ||||||||||||||||||||||| || ||||||||    
T  44620660 tgcaagtgtgagttatatgtcccacatcggatgaaatagta 44620700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 50002423 - 50002467
Alignment:
Q  102 gtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||| ||||||||||||||| ||||||| |||||| |||||    
T  50002423 gtttgcaagtgtgagttatatgtctcacatcggataaaagagtaa 50002467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 50459808 - 50459880
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggttcctc 216  Q
    ||||||||||| ||| || ||||||| ||||||||||||| | ||||| || |||| ||||| ||||| ||||    
T  50459808 taaggttttaggtaagagcgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtgcacggtccctc 50459880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 3537313 - 3537264
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  3537313 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 3537264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 44290624 - 44290575
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  44290624 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 44290575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 44290991 - 44290942
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  44290991 tgttggtttgcaagtgtgagttatatgtcccacatcggataaaatagtaa 44290942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 41759475 - 41759524
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  41759475 tgttggtttgcaagtgtgagttatatgtcacacatcggataaaatagtaa 41759524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 44043943 - 44043895
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  44043943 tgttggtttgcaagtgt-agttatatgtcccacatcgaataaaatagtaa 44043895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 45494145 - 45494095
Alignment:
Q  97 tgttggtttgcaaatgtgagtt-atatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  45494145 tgttggtttgcaagtgtgagtttatatgtcccacatcggataaaatagtaa 45494095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3550712 - 3550761
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||| |||| ||||||||||||||||||||||  ||||||||||||    
T  3550712 tgttggttggcaagtgtgagttatatgtcccacatcagataaaatagtaa 3550761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 48588654 - 48588605
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| |||||||| ||||||| |||||| ||||||||||||    
T  48588654 tgttggtttgcaagtgtgagttctatgtccgacatcggataaaatagtaa 48588605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 50051818 - 50051781
Alignment:
Q  96 atgttggtttgcaaatgtgagttatatgtcccacatcg 133  Q
    |||||||||||||| |||||||||||||||||||||||    
T  50051818 atgttggtttgcaagtgtgagttatatgtcccacatcg 50051781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 50052189 - 50052140
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||  || ||||||||||||||||||||||| ||||||||||||    
T  50052189 tgttggtttttaagtgtgagttatatgtcccacatcggataaaatagtaa 50052140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 44290896 - 44290828
Alignment:
Q  144 taaggttttagataaa-agtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | |||| |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  44290896 taaggttttgggtaaagagtgtggtgtatctcttgcttgtgcggttgttctagcctcgatgtggacggt 44290828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 3537670 - 3537603
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| ||||||| || ||||||||||||||| ||||| || |||| |||||||||||    
T  3537670 taaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 3537603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 14318954 - 14319021
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||  ||||||| ||||| || ||||||||||||||||    
T  14318954 taaggttttgggtaagagtgtggtgtctctcttatttgtgcggttgttctagcctcaatgtggacggt 14319021  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 32594880 - 32594833
Alignment:
Q  99 ttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||| |||||||||||||||| |||||  ||||||||||||    
T  32594880 ttggtttgcaagtgtgagttatatgtcctacatcagataaaatagtaa 32594833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 45084463 - 45084530
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| || ||||||| ||||||||||||||| ||||| ||||||| ||| |||||||    
T  45084463 taaggttttgggtaagagagtggtgtctctcttgcttgtgcggttgttctaacctcgatgcggacggt 45084530  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 3537765 - 3537716
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||||||||| |  ||| ||||||||||||||||||| ||||||||||||    
T  3537765 tgttggtttgtacgtgttagttatatgtcccacatcggataaaatagtaa 3537716  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 34364507 - 34364548
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||    
T  34364507 tgcaagtgtgagttatatgtctcacatcggataaaatagtaa 34364548  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 41142372 - 41142413
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| |||||| |||||    
T  41142372 tgcaagtgtgagttatatgtcccacatcggataaaacagtaa 41142413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 41184583 - 41184542
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||    
T  41184583 tgcaagtgtgagttatatgtctcacatcggataaaatagtaa 41184542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 37850758 - 37850718
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagta 145  Q
    ||||| ||||||||||||||||||||||| |||||| ||||    
T  37850758 tgcaagtgtgagttatatgtcccacatcgcataaaacagta 37850718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 38804516 - 38804472
Alignment:
Q  102 gtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||| ||| ||||||||||| |||||||||||||||||| |||||    
T  38804516 gtttacaagtgtgagttatacgtcccacatcgaataaaagagtaa 38804472  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 40082408 - 40082448
Alignment:
Q  106 gcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    |||| |||||||||||||||| |||||| ||||||||||||    
T  40082408 gcaagtgtgagttatatgtcctacatcggataaaatagtaa 40082448  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 37533068 - 37533015
Alignment:
Q  158 aaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    |||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||    
T  37533068 aaagtgtggtgtctctcttgcttgtgcgcttgttctaacctcgatgtggacggt 37533015  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 37533176 - 37533127
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  37533176 tgttggtttgcaagtgtgagttatatgtcccacattggataaaatagtaa 37533127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 29157559 - 29157606
Alignment:
Q  99 ttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||||    
T  29157559 ttggtttgcaagtgtgagttatatgtcccacaccggataaaatagtaa 29157606  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 36939804 - 36939741
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtgga 207  Q
    ||||||||| | ||||||||||||||||||||||||| |||| ||||| || |||| |||||||    
T  36939804 taaggttttgggtaaaagtgtggtgtttctcttgcttatgcggttgttctagcctcgatgtgga 36939741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 1085774 - 1085733
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  1085774 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 1085733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 7554025 - 7554066
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  7554025 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 7554066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 14681502 - 14681551
Alignment:
Q  97 tgttggtttgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||||||||||| ||| ||||||||||||||||||  ||||||||||||    
T  14681502 tgttggtttgcaagtgtaagttatatgtcccacatcagataaaatagtaa 14681551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 36622960 - 36623001
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  36622960 tgcaagtgtgagttatatgtcccacatcggataaaatagtaa 36623001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 30032573 - 30032609
Alignment:
Q  111 tgtgagttatatgtcccacatcgaataaaatagtaag 147  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30032573 tgtgagttatatgtcccacatcgaataaaagagtaag 30032609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 11845278 - 11845345
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| ||||| |||||||||| ||||||||||||||  ||||| || |||| |||| ||||||    
T  11845278 taaggttttggataagagtgtggtgtctctcttgcttgtgcagttgttctagcctcgatgtagacggt 11845345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 14681281 - 14681324
Alignment:
Q  99 ttggtttgcaaatgtgagttatatgtcccacatcgaataaaata 142  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||    
T  14681281 ttggtttgcaagtgtgagttatatgtcccacattggataaaata 14681324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 37167884 - 37167935
Alignment:
Q  160 agtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    |||||||||| ||||||||||||||| ||||| || |||| |||||||||||    
T  37167884 agtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt 37167935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 37533435 - 37533368
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||| ||||||||||| ||||| || |||| |||||||||||    
T  37533435 taaggttttgggtaagagtgtggtgtctcttttgcttgtgcggttgttctagcctcgatgtggacggt 37533368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 47129456 - 47129523
Alignment:
Q  144 taaggttttagataaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||||||| | ||| |||||||||| ||||||||||||||| ||| | || |||| |||||||||||    
T  47129456 taaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgatctagcctcgatgtggacggt 47129523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 7517580 - 7517621
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||||||||||| |||||| |||||    
T  7517580 tgcaagtgtgagttatatgtcccacatcggataaaagagtaa 7517621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 36939891 - 36939850
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| |||||||||||||||||| |||| ||||||||||||    
T  36939891 tgcaagtgtgagttatatgtcccaaatcgtataaaatagtaa 36939850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 40094932 - 40094891
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||| |||||||||||||| |||||    
T  40094932 tgcaagtgtgagttatatgtctcacatcgaataaaagagtaa 40094891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 40230449 - 40230408
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||| |||||||||||||||||||||||||| |||||    
T  40230449 tgcaagtgtaagttatatgtcccacatcgaataaaaaagtaa 40230408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 47459 - 47514
Alignment:
Q  156 taaaagtgtggtgtttctcttgcttgtgcgattgttttaacctcaatgtggacggt 211  Q
    ||||| |||||||| ||||||||||| ||| ||||| ||||||| |||||||||||    
T  47459 taaaaatgtggtgtctctcttgcttgcgcggttgttctaacctcgatgtggacggt 47514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 5396 - 5437
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| |||||||||||||||| |||||| ||||||||||||    
T  5396 tgcaagtgtgagttatatgtcctacatcggataaaatagtaa 5437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 5777 - 5818
Alignment:
Q  105 tgcaaatgtgagttatatgtcccacatcgaataaaatagtaa 146  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||    
T  5777 tgcaagtgtgagttatatgtcgcacatcggataaaatagtaa 5818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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