View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17601_low_12 (Length: 224)
Name: NF17601_low_12
Description: NF17601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17601_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 36295657 - 36295464
Alignment:
| Q |
17 |
agagattaagttaattacttgaggtgccagaaaattcatctctttagagcttccaaaaccatgcacaatgatgatcttgtatgttgctttatctttagga |
116 |
Q |
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| T |
36295657 |
agagattaagttaattacttgaggtgccagaaaattcatctctttagagcttccaaaaccatgcacaatgatgatcttgtatgttgctttatctttaggt |
36295558 |
T |
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| Q |
117 |
acacctctctcaacataagcaagatgtctaccatctctaagtctaattcttggtgaaaccatagaaaaatcatctgttgaatcatcttggtttg |
210 |
Q |
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| T |
36295557 |
acacctctctcaacataagcaagatgtctaccatctctaagtctaattcttggtgaaaccatagaaaaatcatctgttgaatcatcttggtttg |
36295464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 36299038 - 36298929
Alignment:
| Q |
67 |
ttccaaaaccatgcacaatgatgatcttgtatgttgctttatctttaggaacacctctctcaacataagcaagatgtctaccatctctaagtctaattct |
166 |
Q |
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| T |
36299038 |
ttccaaaaccatgcacaatgttaatcttgtatgttgctttggccatagggaagcctctctcactgcaagcaaggtgcctcccatctctgagtctgattct |
36298939 |
T |
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| Q |
167 |
tggtgaaacc |
176 |
Q |
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|||| ||||| |
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| T |
36298938 |
tggtaaaacc |
36298929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 168
Target Start/End: Original strand, 48300647 - 48300756
Alignment:
| Q |
59 |
tttagagcttccaaaaccatgcacaatgatgatcttgtatgttgctttatctttaggaacacctctctcaacataagcaagatgtctaccatctctaagt |
158 |
Q |
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| T |
48300647 |
tttagtgcttccaaaaccatgcacaatgataatcttgtattttgctttgtccttagggacgcctctctcaatgtaagcaaggtgcctcccgtctctgagt |
48300746 |
T |
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| Q |
159 |
ctaattcttg |
168 |
Q |
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| T |
48300747 |
ctgattcttg |
48300756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 19305251 - 19305398
Alignment:
| Q |
32 |
tacttgaggtgccagaaaattcatctctttagagcttccaaaaccatgcacaatgatgatcttgtatgttgctttatctttaggaacacctctctcaaca |
131 |
Q |
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|||||| ||||| |||| ||||| ||||||||||||||||||||||| |||| ||||| | | | |||||||||| || | |||||| || || | |
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| T |
19305251 |
tacttgtggtgcaggaaagttcatatctttagagcttccaaaaccatgaacaacaatgatgctatgttttgctttatcctttgtaacaccactttctcta |
19305350 |
T |
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| Q |
132 |
taagcaagatgtctaccatctctaagtctaattcttggtgaaaccata |
179 |
Q |
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| T |
19305351 |
taagcaagaaatcttccatcactgagttgaattcttgttgaaaccata |
19305398 |
T |
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