View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17601_low_2 (Length: 417)
Name: NF17601_low_2
Description: NF17601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17601_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 38093125 - 38092748
Alignment:
| Q |
13 |
aatatattcaaggaaattttgcaacaagaacaaatattcctggatcccacaatttgaatgaagatcttgttctcatagacgtatcaaattgtccgaagga |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38093125 |
aatatattcaaggaaattttgcaactagaacaaatattcgtggatcccacaatttgaatgaagatcttgttctcatagacgtatcgaattgtccgaagga |
38093026 |
T |
|
| Q |
113 |
atcccattgtttccttttt-ccaatatttctcattcaagaaaacaacatatagggtttctttccttctgcaccctttgagtcaattctgcatgctttgtt |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38093025 |
atcccattgtttccttttttccaatatttctcattcaagaaaacaacatatagggtttcttg-----tgcaccctttgagtcaattctgcatgctttgtt |
38092931 |
T |
|
| Q |
212 |
gtctccattagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaactaatgacggt |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| | |||||| |
|
|
| T |
38092930 |
gtctccattagccctgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttcttttttggctcagaactcacgacggt |
38092831 |
T |
|
| Q |
312 |
tgcttccgatacaacgatgctggaaaccgggaagattgccaacaaagcaccaccggcggagaagagacgagtccggttttggt |
394 |
Q |
| |
|
|||||||||||||| || |||||| | ||| |||| |||| |||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
38092830 |
tgcttccgatacaaagacgctggacaacggcaagagtgccgacaaagcacctccggcggagaagagacgagttcggttttggt |
38092748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 219 - 394
Target Start/End: Complemental strand, 38089937 - 38089765
Alignment:
| Q |
219 |
ttagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaactaatgacggttgcttcc |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| ||||| | |||||||| ||| |
|
|
| T |
38089937 |
ttagccttgaccccaacaattcatgtacataactttctggagagaatcatcggtttgtctcagcttctcttcaaccttagaac---tcacggttgcgtcc |
38089841 |
T |
|
| Q |
319 |
gatacaacgatgctggaaaccgggaagattgccaacaaagcaccaccggcggagaagagacgagtccggttttggt |
394 |
Q |
| |
|
|||||||||| |||||| | || |||| |||| |||||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
38089840 |
gatacaacgacgctggacagtggcaagagtgccgacaaagcaccgcccgcagagaagagacgagttcggttttggt |
38089765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 38096191 - 38096108
Alignment:
| Q |
219 |
ttagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaact |
302 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||| | |||||| | ||| |||||||| |
|
|
| T |
38096191 |
ttagccttgaccccagcaattcatgtacataactttccgaagagaatcatcggttcttcttagcttctcatccgcttcagaact |
38096108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University