View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17601_low_6 (Length: 325)
Name: NF17601_low_6
Description: NF17601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17601_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 483778 - 484087
Alignment:
| Q |
7 |
tagataattcttgaaatagcatcctttcgcttctttcttcgtctgtttcattttgttattggaagacacagttatagaaatgaagtaaaagagaactaag |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
483778 |
tagacaattcttgaaatagcatcctttcgcttctttcttcgtctgtttcattttgttattggaagacacagttatagaaatgaagtaaaagagaactaag |
483877 |
T |
|
| Q |
107 |
actagttagttatattag--------ttgttcttctcattaactatataagccttacatatcccttgatgtaattaattctctaatcatggatttaattt |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
483878 |
actagttagttatattagtttgttagttgttcttctcattaactatataagccttacatatcccttgatgtaattaattctctaatcatggatttaattt |
483977 |
T |
|
| Q |
199 |
tcattttacttttctcttatcaatgacttctattaagaatagtaacaagtttcttataagaattgaaatttacaagtgtagaagttcttcacctttgtct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
483978 |
tcattttacttttctcttatcaatgacttctattaagaatagtaacaagtttcttataagaattgaaatttacaagtgtagaagttcttcacctttgtct |
484077 |
T |
|
| Q |
299 |
ctatcatttt |
308 |
Q |
| |
|
|||||||||| |
|
|
| T |
484078 |
ctatcatttt |
484087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 34239792 - 34239828
Alignment:
| Q |
205 |
tacttttctcttatcaatgacttctattaagaatagt |
241 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34239792 |
tacttttatcttatcaatgacttctattaagaatagt |
34239828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 35905311 - 35905356
Alignment:
| Q |
193 |
taattttcattttacttttctcttatcaatgacttctattaagaata |
239 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
35905311 |
taattttcattttactttt-tcttatcaaagacttctatcaagaata |
35905356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University