View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17602_low_1 (Length: 600)
Name: NF17602_low_1
Description: NF17602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17602_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 19 - 589
Target Start/End: Complemental strand, 14304891 - 14304321
Alignment:
| Q |
19 |
ttattaacctgaaaaatagaatgaatactcgtctgctcatccacagccgtatcaaatgacaaaagtgtaacaagcggtctaatcgcattctccctcgcga |
118 |
Q |
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| T |
14304891 |
ttattaacctgaaaaatagaatgaatactcgtctgctcatccacagccgtatcaaacgacaaaagtgtaacaagcggtctaatcgcattctccctcgcga |
14304792 |
T |
|
| Q |
119 |
aatcctcttgagcaacaggatcatgtttagccatcctagcaaccaaattagccgctagcgtttgaaccctaatcggcgaatcagcaagaacctgaacaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304791 |
aatcctcttgagcaacaggatcatgtttagccatcctagcaaccaaattagccgctagcgtttgaaccctaatcggcgaatcagcaagaacctgaacaac |
14304692 |
T |
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| Q |
219 |
agcaggtacaccaacttcattcacaataaccctaattctctccaaatcattagccaaataacacaaacaagtagccgccgcaatttgcgctgcaggcgaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14304691 |
agcaggtacaccaacttcattcacaataaccctaattctctccaaatcattagccaaataacacaaacaagtagccgccgcaatttgtgctgcaggcgaa |
14304592 |
T |
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| Q |
319 |
gaagcttctttcaaaagcttcaaaagaggcggaacaccaccttcttcaacaataatcttcttattcctatcattatcttgtgctaacgaagcaagttcat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304591 |
gaagcttctttcaaaagcttcaaaagaggcggaacaccgccttcttcaacaataatcttcttattcctatcattatcttgtgctaacgaagcaagttcat |
14304492 |
T |
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| Q |
419 |
ttgtagcttcaattttatcattcaattgacccatttgaattgaagctataaaagaccatacccatgacagaattggatcattactcgcaatcggtggaag |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304491 |
ttgtagcttcaattttatcattcaattgacccatttgaattgaagctataaaagaccatacccatgacagaattggatcattactcgcaatcggtggaag |
14304392 |
T |
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| Q |
519 |
cgataagttaattccaccgccgccgccggagccttcgacgtcgaggatacttaaaagccacttcatctcac |
589 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
14304391 |
cgataagttaattccaccgccgccgccggagccgtcgacgtcgaggatacttaaaagccacttcatatcac |
14304321 |
T |
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