View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17602_low_2 (Length: 438)
Name: NF17602_low_2
Description: NF17602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17602_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 38721655 - 38721249
Alignment:
| Q |
16 |
atgcacctccttattttttgcagtaacaacataaaacattcctaactcatcaacatcaaacttcctcctacggttccatcgaaatctttcacttggtcca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38721655 |
atgcacctccttattttttgcagtaacaacataaaacattcctaactcatcaacatcaaacttcctcctacggttccatcgaaatctttcacttggtcca |
38721556 |
T |
|
| Q |
116 |
acctcagcctctttacaaacaacatttcttttatttgatttcccccaacgtaaaattccagcagcaccaatcattaccaattgtttcttatgtggcaacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38721555 |
acctcagcctctttacaaacaacatttcttttatttgatttcccccaacgtaaaattccagcagcaccaatcattaccaattgtttcttatgtggcaacc |
38721456 |
T |
|
| Q |
216 |
ctttaccacattttgtatgttttttcacacatgcaccacacaacactactcttctagctaactcatctagtatcacacgctctgcatcatttcctttgtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38721455 |
ctttaccacattttgtatgttttttcacacatgcaccacgcaacactactcttctagctaactcatctagtatcacacgctctgcatcatttcctttgtt |
38721356 |
T |
|
| Q |
316 |
attttctcttgcaagtaaaagtgctgtttcattcctctcatttttaacatcacattttgctccataagatatcaaaatctcacacatttctccattactt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38721355 |
attttctcttgcaagtaaaagtgctgtttcattcctctcatttttaacatcacattttgctccataagatatcaaaatctcacacatttctccattactt |
38721256 |
T |
|
| Q |
416 |
tctcttg |
422 |
Q |
| |
|
||||||| |
|
|
| T |
38721255 |
tctcttg |
38721249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University