View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17602_low_3 (Length: 302)
Name: NF17602_low_3
Description: NF17602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17602_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 8039275 - 8039571
Alignment:
| Q |
1 |
ctctaaattattgcagaagccgattcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatgg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8039275 |
ctctaaattattgcagaagctgattcaaagctcattcagcatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatgg |
8039374 |
T |
|
| Q |
101 |
aaaacctgatgcatatagtctaatttcatgtacatcctttcctatcatttcacttaatttgttgagacaaattcggtgcggattcgtagtgaatctcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
8039375 |
aaaacctgatgcatatagtctaatttcatgtacatcctttcctatcatttcacttaatttgttgagacaaattcagtgcggattcgaagtgaatctcatg |
8039474 |
T |
|
| Q |
201 |
tactcttatctcgatgtttaattgtacaactcataaagattaaattgtcgttgattattgttggagtttgttatagctactgtcttattatcctttg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8039475 |
tactcttatctcgatgtttaattgtacaactcataaagattaaattgtcgttgattattgttggagtttgttatagctactgtcttattattctttg |
8039571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 8413625 - 8413412
Alignment:
| Q |
21 |
cgattcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacc---tgatgcatata |
117 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||| ||||| |
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|
| T |
8413625 |
cgattcaaagctcatttggcgtttttggtattgacaattacttctgtctattcc-ttttctctgataaaattttgaatggaaaaccggatgatcaatata |
8413527 |
T |
|
| Q |
118 |
gtctaatttca-tgtacatcctttcctatcatttcacttaatttgttgagacaaattcggtgcggattcgtagtgaatctcatgtactcttatc-tcgat |
215 |
Q |
| |
|
||| ||||||| || ||||||||||||||| || ||| || ||||| |||| ||| || ||||||| | | |||||| | ||| |||| ||||| | ||| |
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|
| T |
8413526 |
gtcaaatttcattgcacatcctttcctatcgttccacgtagtttgtcgagaaaaaatcagtgcggaattgaagtgaaacacatctacttttatcttggat |
8413427 |
T |
|
| Q |
216 |
gtttaattgtacaac |
230 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
8413426 |
gtttcattgtacaac |
8413412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 31395917 - 31396194
Alignment:
| Q |
21 |
cgattcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtc |
120 |
Q |
| |
|
|||||||||||||||||| | ||| |||||| ||||||||| ||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31395917 |
cgattcaaagctcattcagcgtttctggtattgacaattacctctatttattcctttttctcagataaaattatgaatggaaaaccagatgcatatagtc |
31396016 |
T |
|
| Q |
121 |
taatttcatgtacatcctttcctatcatttcacttaatttgttgagacaaattcggtgcggattcgtagtgaatctcatgtactcttatctc-gatgttt |
219 |
Q |
| |
|
||||||||||| | ||||| |||| || ||||||| |||| ||| ||||||| ||| ||||| | |||| |||| ||||||| ||||||| ||||||| |
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|
| T |
31396017 |
taatttcatgtgctgccttttctatgatgtcacttagcttgtcgaggcaaattcagtgtggatttgaagtggatcttatgtacttttatctcggatgttt |
31396116 |
T |
|
| Q |
220 |
aattgtacaactcataaagattaaattgtcgttgattattgttggagtttgttatagctactgtcttattatcctttg |
297 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
31396117 |
aattgtacaactcatgaagattaaattattgttagctattgttggagtttgttatagttagtgtcttattattctttg |
31396194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 31416476 - 31416208
Alignment:
| Q |
24 |
ttcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtctaa |
123 |
Q |
| |
|
|||||||||||| || | ||| | |||| |||||| ||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
31416476 |
ttcaaagctcatacagcttttctagtattgacaatcactgctgtctattcatttttctctgataaaattatgaatggaaaaccagatgcatatactctaa |
31416377 |
T |
|
| Q |
124 |
tttcatgtacatcctttcctatcatttcacttaatttgttgagacaaattcggtgcggattcgtagtgaatctcatgtactcttatct-cgatgtttaat |
222 |
Q |
| |
|
|||| ||||| || ||| |||| || ||||||| |||| ||| ||||||| ||| ||||| | ||| |||| ||||||| |||||| |||||||||| |
|
|
| T |
31416376 |
tttcgtgtacttctttttctatgatgtcacttagcttgtcgaggcaaattcagtgtggatttgaagttgatcttatgtacttttatctaggatgtttaat |
31416277 |
T |
|
| Q |
223 |
tgtacaactcataaagattaaattgtcgttgattattgttggagtttgttatagctactgtcttattat |
291 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31416276 |
tgtacaactcatgaagattaaattgtcgttagctattgttggagtttgttatagctactgtgttattat |
31416208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 31494062 - 31493794
Alignment:
| Q |
24 |
ttcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtctaa |
123 |
Q |
| |
|
|||||||||||| || | ||| |||||| ||||| || ||||| ||||| ||||||| || |||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
31494062 |
ttcaaagctcatacagcttttctggtattaacaatcacctctgtctattcatttttctttggtaaagtggtgaatggaaaaccagatgcatatagtctaa |
31493963 |
T |
|
| Q |
124 |
tttcatgtacatcctttcctatcatttcacttaatttgttgagacaaattcggtgcggattcgtagtgaatctcatgtactcttatct-cgatgtttaat |
222 |
Q |
| |
|
| ||||| | ||||| ||||||| || |||| |||| ||| ||||||| ||||||||| | ||| |||| || |||| ||| || ||| |||||| |
|
|
| T |
31493962 |
taacatgtgctgcctttgctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatttacttttacctaggatatttaat |
31493863 |
T |
|
| Q |
223 |
tgtacaactcataaagattaaattgtcgttgattattgttggagtttgttatagctactgtcttattat |
291 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31493862 |
tgtacaactcacgaagattaaattactgttatctattgttggagtttgttatagctactgtcttattat |
31493794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 247
Target Start/End: Original strand, 31281638 - 31281817
Alignment:
| Q |
69 |
tattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtctaatttcatgtacatcctttcctatcatttcacttaatttgttgagac |
168 |
Q |
| |
|
||||||||||||| ||||||| | |||||||||||||| |||||||| ||||||||||||||| | ||||| ||||||| ||||| | |||||| || | |
|
|
| T |
31281638 |
tattcctttttctttgataaagtgatgaatggaaaaccagatgcatacagtctaatttcatgtgccgcctttgctatcatgtcactaagtttgttaaggc |
31281737 |
T |
|
| Q |
169 |
aaattcggtgcggattcgtagtgaatctcatgtactcttatctc-gatgtttaattgtacaactcataaagattaaattg |
247 |
Q |
| |
|
||| || |||||||||||||||| |||| | ||| || |||| ||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
31281738 |
aaactcagtgcggattcgtagtggatcttctttacatttttctcggatgtttaattgtgcaactcatgaaggttaaattg |
31281817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 31317516 - 31317657
Alignment:
| Q |
21 |
cgattcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtc |
120 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| | ||||| | ||||||||||||| ||||||| | |||||||| ||||| |||||||||||| |
|
|
| T |
31317516 |
cgattcaaagctcattcggcatttctggtattgacactcacttcaatctattcctttttctttgataaagtcatgaatgggaaaccagatgcatatagtt |
31317615 |
T |
|
| Q |
121 |
taatttcatgtacatcctttcctatcatttcacttaatttgt |
162 |
Q |
| |
|
||||||||||| | ||||| |||| || ||||||| ||||| |
|
|
| T |
31317616 |
taatttcatgtgctgcctttgctattatgtcacttagtttgt |
31317657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 31279418 - 31279194
Alignment:
| Q |
21 |
cgattcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtc |
120 |
Q |
| |
|
||||||||||| || || ||| |||||||| |||||| || || ||||||| ||||||| |||||| | |||||||| |||||||||| |||||| | |
|
|
| T |
31279418 |
cgattcaaagcacacacagcatatttggtattgacaatgacctcgctatattcatttttcttcgataaattgatgaatgggaaacctgatggatatagcc |
31279319 |
T |
|
| Q |
121 |
taatttcatgtacatcctttcctatcatttcacttaatttgttgagacaaattcggtgcggattcgtagtgaatctcatgtactcttatc-tcgatgttt |
219 |
Q |
| |
|
| ||||||||| | |||||| ||||||| ||||||| ||||| | | |||| || ||||||||| | ||| |||| | |||| || || | ||||| | |
|
|
| T |
31279318 |
tcatttcatgtgcttcctttgctatcatgtcacttagtttgtcgcggcaaactcagtgcggatttgaagttgatcttctttacttttttcttggatgtct |
31279219 |
T |
|
| Q |
220 |
aattgtacaactcataaagattaaa |
244 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
31279218 |
aattgtacaactcatgaagattaaa |
31279194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 31368729 - 31368865
Alignment:
| Q |
20 |
ccgattcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagt |
119 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| |||| | |||| | ||||||||||||||| ||||| | |||||||| ||||| |||||||||||| |
|
|
| T |
31368729 |
ccgattcaaagctcattcggcatttctggtattgacactcactttaatctattcctttttctctaataaagtcatgaatgggaaaccagatgcatatagt |
31368828 |
T |
|
| Q |
120 |
ctaatttcatgtacatcctttcctatcatttcactta |
156 |
Q |
| |
|
|||||||||||| | ||||| |||| || ||||||| |
|
|
| T |
31368829 |
ctaatttcatgtgctgcctttgctattatgtcactta |
31368865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 247
Target Start/End: Complemental strand, 31505781 - 31505602
Alignment:
| Q |
69 |
tattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtctaatttcatgtacatcctttcctatcatttcacttaatttgttgagac |
168 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| ||||| ||||||||||| || |||||| || | |||||| ||||||| || || | ||||| | | | |
|
|
| T |
31505781 |
tattcctttttctccgataaaatgattaatgggaaaccagatgcatatagcctcatttcaagtgcttcctttgctatcatgtcgctcagtttgtcgcggc |
31505682 |
T |
|
| Q |
169 |
aaattcggtgcggattcgtagtgaatctcatgtactcttatctc-gatgtttaattgtacaactcataaagattaaattg |
247 |
Q |
| |
|
||| || ||||||||| | ||| |||| | |||| || |||| ||||||||||||||||||| || |||||||||||| |
|
|
| T |
31505681 |
aaactcagtgcggatttgaggtggatcttctttacttttttctcggatgtttaattgtacaactaatgaagattaaattg |
31505602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 31643813 - 31643672
Alignment:
| Q |
21 |
cgattcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtc |
120 |
Q |
| |
|
||||||||||| || || ||| |||||||| ||||| ||||| ||||||| ||||||| ||||||| | ||||||||||||| ||||||||||| | |
|
|
| T |
31643813 |
cgattcaaagcacacacagcatatttggtattaacaatcacttcgttatattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcc |
31643714 |
T |
|
| Q |
121 |
taatttcatgtacatcctttcctatcatttcacttaatttgt |
162 |
Q |
| |
|
| ||||| ||| | |||||| ||||||| ||||||| ||||| |
|
|
| T |
31643713 |
tcatttcttgtgcttcctttgctatcatgtcacttagtttgt |
31643672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 31284878 - 31285002
Alignment:
| Q |
24 |
ttcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtctaa |
123 |
Q |
| |
|
|||||||||||| | | |||||||||| |||||| || || ||||||| ||||||| ||||||| | | ||||||||||| ||||||||||| || | |
|
|
| T |
31284878 |
ttcaaagctcatgctgcgtttttggtattgacaatcacctcattatattcatttttctttgataaagtagttaatggaaaaccagatgcatatagcctca |
31284977 |
T |
|
| Q |
124 |
tttcatgtacatcctttcctatcat |
148 |
Q |
| |
|
|||||||| | |||||| ||||||| |
|
|
| T |
31284978 |
tttcatgtgcttccttttctatcat |
31285002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 31407352 - 31407228
Alignment:
| Q |
24 |
ttcaaagctcattcaacatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtctaa |
123 |
Q |
| |
|
|||||||||||| || | ||||| |||| |||||| || ||||| ||||| ||||||| ||||||| | ||||||||||||| ||||||||||| | | |
|
|
| T |
31407352 |
ttcaaagctcatacagcttttttagtattgacaatcacctctgtctattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcttga |
31407253 |
T |
|
| Q |
124 |
tttcatgtacatcctttcctatcat |
148 |
Q |
| |
|
|||||||| | ||||| ||||||| |
|
|
| T |
31407252 |
tttcatgtgccgcctttgctatcat |
31407228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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