View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17603_high_1 (Length: 580)
Name: NF17603_high_1
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Original strand, 44065752 - 44066249
Alignment:
| Q |
11 |
cacagacagagattgaagtcagtctttggcatatgtgtctaaggccttggatatgatatcttgctttctacgctataactctacatctatatcaacaaat |
110 |
Q |
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| T |
44065752 |
cacagacagagattgaagtcagtctttggcatatgtgtctaaggccttggatatgatatcttgctttctatgctataattctacatctatatcaacaaat |
44065851 |
T |
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| Q |
111 |
aaatcatccttgtggatattattgatgactaatggtacggtgcatgtgtttaatagtggtacaggcaccccaagtttttatttatttactttttatggta |
210 |
Q |
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| T |
44065852 |
aaatcatccttgtgaatattattgatgactaatggtacggtgcatgtgtttaatagtggtacaggcaccccaagtttttatttatttactttttatggta |
44065951 |
T |
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| Q |
211 |
aatacaaattcattcaatagaaaaatacaagaatattaatcaagtgattgaactcaagtgactaatgagttcgcccaagatgaatcattcaaaaagaacc |
310 |
Q |
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| T |
44065952 |
aatacaatttcattcaatagaaaaatacaagaatattaaccaagtgattgaactcaagtgactaatgagttcgtccaagatgaatcattcaagaggaacc |
44066051 |
T |
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| Q |
311 |
gagttcaatttctgatgaaataattattggtcagactttaatatattcgttgatattattattttacacatattgtgttgcagatgtgataaattaatca |
410 |
Q |
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| T |
44066052 |
gagttcaatttctgatgaaataattattgatcaaactttaatatattcgttgatattattattttacacatattgtgatgcagatgtgataaattaatca |
44066151 |
T |
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| Q |
411 |
cacactcaagaggagttgcaaaatttagtgaatcaaaaatctgcatgataaatgaaattttttattcatttttccaatccagcctgcctcggctcgtt |
508 |
Q |
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| T |
44066152 |
cacactcaagaggagttgcaaaatttagtgaatcaaaaatctgcatgataaatgagattttttattcatttttccaatccagcctgcctcggctcgtt |
44066249 |
T |
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