View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17603_high_2 (Length: 481)
Name: NF17603_high_2
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Original strand, 1187738 - 1188173
Alignment:
| Q |
12 |
tgagatgaatgatggatgaattgcatctagtgacaaatttcaattaaaaatgccaatgccaatgccatgctgaatcgtacgtacacacacattctttgcc |
111 |
Q |
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| T |
1187738 |
tgagatgaatgatggatgaattgcatctagtgacaaatttcaattaaaaatgccaatgccaatgccatgctgaatcgtacgtacacacacattctttgcc |
1187837 |
T |
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| Q |
112 |
gttctggtgttgaattgtgtcatattgtgtgagctagctgtttttatgtccaaattgaaggtttttcatgtgtaagaggcacaactccctctttgcctat |
211 |
Q |
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| T |
1187838 |
gttctggtgttgaattgtgtcatattgtgtgagctagctgtttttatgtccaaattgaaggtttttcatgtgtaagaggcacaactccctctttgcctat |
1187937 |
T |
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| Q |
212 |
tcattcctttccttgcagtacaagtacattatgcatgcaatcaatgatttttggtcttattttagttttctacaatcaagtacctacctagataagtcca |
311 |
Q |
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| T |
1187938 |
tcattcctttccttgcagtacaagtacattatgcatgcaatcaatgatttttggtcttattttagttttctacaatcaagtacctacctagataagtcca |
1188037 |
T |
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| Q |
312 |
aagtaagacattaattttgctgtcgtattcattcaattctgtttctcaatgattgggatgatcgattacttgagcttgtgaacaattttcattttccaat |
411 |
Q |
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| T |
1188038 |
aagtaagacattaattttgctgtcgtattcattcaattcagtttctcgatgattgggatgatcgattacttgagcttgtgaacaattttcattttccaat |
1188137 |
T |
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| Q |
412 |
tcaattcaaggatatggtggtagtatgtgatgaatg |
447 |
Q |
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| T |
1188138 |
tcaattcaaggatatggtggtagtatgtgatgaatg |
1188173 |
T |
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