View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17603_high_4 (Length: 392)
Name: NF17603_high_4
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 39090472 - 39090110
Alignment:
| Q |
13 |
aatatatccgcaatggcagcaccaccggcttgaccaggataaccagcccacaagatgcctataattcgaggatcattctttgcaaaagttatatctatag |
112 |
Q |
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| T |
39090472 |
aatatatccgcaatggcagcaccaccggcttgaccaggataaccagcccacaaaatgcccataattcgaggatcattctttgcaaaagttatatctatag |
39090373 |
T |
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| Q |
113 |
gaccaccagacattaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttgatgtccaggaagaagtaaaccagtcct |
212 |
Q |
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| T |
39090372 |
gcccaccagacattaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttgatgtccaggaagaagtaaaccagtcct |
39090273 |
T |
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| Q |
213 |
atctaccatttcagcctcaattgactgatccaatcccatcactagaacagtagcatccgcttgacgggctgcatttagagccgacccaaattgtttatca |
312 |
Q |
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| T |
39090272 |
atctaccatttcagcctcaattgactgatccaatcccatcactagaacagtagcatccgcttgacgggctgcatttagagccgacccaaattgtttatca |
39090173 |
T |
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| Q |
313 |
tcattgcatgccacattcgcacaaccaggctcgtgaatagtccttgcatatttccctattcct |
375 |
Q |
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| T |
39090172 |
tcattgcatgccacattcgcacaaccgggctcgtgaatagtccttgcatatttccctattcct |
39090110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 44714956 - 44715248
Alignment:
| Q |
22 |
gcaatggcagcaccaccggcttgaccaggataaccagcccacaagatgcctataattcgaggatcattctttgcaaaagttatatctataggaccaccag |
121 |
Q |
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| T |
44714956 |
gcaattgcagcaccaccagcttggcctggataacccgcccacaatatgccagcaactttggggtcattctttgcaaaagtaatgtccacaggcccaccag |
44715055 |
T |
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| Q |
122 |
acattaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttgatgtccaggaagaagtaaaccagtcctatctaccat |
221 |
Q |
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| T |
44715056 |
acatcaaaaccaaaatagttggtccctttgatgcagctgccacctttgaaacaagatcttgttgatgtccaggcaaaagcaagctagtcctatcaacagt |
44715155 |
T |
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| Q |
222 |
ttcagcctcaattgactgatccaatcccatcactagaacagtagcatccgcttgacgggctgcatttagagccgacccaaattgtttatcatc |
314 |
Q |
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| T |
44715156 |
ttcagcttcaatggattggtccaagcctatcactaaaatagttgcatctgcatgacgagctgcatccagggcaggtccaaattgtttatcatc |
44715248 |
T |
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