View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17603_high_7 (Length: 324)
Name: NF17603_high_7
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 45348769 - 45349073
Alignment:
| Q |
1 |
cttcccatgcattttcaattattaatttttataaaaatgttcaatatttatcagttactactactattatctttacacgtagtatttaatatttcacatt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
45348769 |
cttcccatgcattttcaattatttatttttataaaaaagttcaatatttatcagttactactactataatatatacacgtagtatttaatatttcacatt |
45348868 |
T |
|
| Q |
101 |
gtagaataactatactaattaatgaatttccgtgtccaaatgtaggtgtaagatttgaaatatattaatgggcaatataaagggaaaatgtaagaagaat |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45348869 |
gtagaataactatactaatgaatgaatttccgtgtccaaatgtaggtgtaagatttgaaatatattaatgggcaatataaagggaaaatgtaagaagaat |
45348968 |
T |
|
| Q |
201 |
aagatattgaaggcatggcgatcatttggacgtggaggtgacaatagcaatatgaggtcattacttttgaataagagtagttcaaaatcattttcagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45348969 |
aagatattgaaggcatggcgatcattaggacgtggaggtgacaatagcaatatgaggtcattacttttgaataagagtagttcaaaatcattttcagaaa |
45349068 |
T |
|
| Q |
301 |
atgcg |
305 |
Q |
| |
|
||||| |
|
|
| T |
45349069 |
atgcg |
45349073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University