View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17603_low_12 (Length: 248)
Name: NF17603_low_12
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 40 - 248
Target Start/End: Complemental strand, 39090660 - 39090449
Alignment:
| Q |
40 |
gttacatttagccccaacaatttcttaaatcgtcgctcctctagatggataaagacatataagataatgatttttcttgtgttcagttgggtgaatccag |
139 |
Q |
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| T |
39090660 |
gttacatttagccccaacaatttcttaaattgacgctcctctaaatggataaagacatataagataatgttttttcttgtgtccagttgggtaaatccgg |
39090561 |
T |
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| Q |
140 |
actggaacgatttttaagaatcgtaggtgaa---aagctcccttaaaaagaatagattcattacaaacctgggttagcggttccaaacaatatatccgca |
236 |
Q |
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| T |
39090560 |
actggaacgatttttaagaatcgtaggtgaaaagaagctcccttaaaaaggatagattcattacaaacctgggttagtggttccaaacaatatatccgca |
39090461 |
T |
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| Q |
237 |
atggcagcacca |
248 |
Q |
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| T |
39090460 |
atggcagcacca |
39090449 |
T |
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