View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17603_low_13 (Length: 247)
Name: NF17603_low_13
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 14247650 - 14247429
Alignment:
| Q |
12 |
tttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtggatgaattggtggaggaagtgaaggtactgtcttggaggtgggtgttgga |
111 |
Q |
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| T |
14247650 |
tttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtggatgaattggtggaggaagtgaaggtactgtcttggaggtgggtgttgga |
14247551 |
T |
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| Q |
112 |
tagaactaaagtggcaatgtgtttgttctatgaatggtgttggaacccaaaagaatgccttatgcgataagtggaggtttttcctcgagtttcagtgaat |
211 |
Q |
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| T |
14247550 |
tagaactaaagtgccaacgtgtttgttctatgaatggtgttggaacccaaaagaatgccttatgcgataagtggaggtttttcctcgagtttcagtgaat |
14247451 |
T |
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| Q |
212 |
attgacagcgctgttgctggtg |
233 |
Q |
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| T |
14247450 |
attgacagcgctgttgctggtg |
14247429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 9850424 - 9850332
Alignment:
| Q |
138 |
tctatgaatggtgttggaacccaaaagaatgccttatgcgataagtggaggtttttcctcgagtttcagtgaatattgacagcgctgttgctg |
230 |
Q |
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| T |
9850424 |
tctatgaatggtgttggaacccaaaagaatgccttatgcgataagtggagttttttcctcgagtttcagtgaatattgatagcgctattgctg |
9850332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 9850675 - 9850591
Alignment:
| Q |
12 |
tttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtggatgaattggtggaggaagtgaaggtactgtcttg |
96 |
Q |
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| T |
9850675 |
tttggaattctaggaatagcttaatctttatgaatgtggtaaagagggtggaggaattggcggaggaagtgaaggtactgtcttg |
9850591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 1330433 - 1330218
Alignment:
| Q |
12 |
tttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtggatgaattggtggaggaagtgaaggtactgtcttggaggtgggtgttgga |
111 |
Q |
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| T |
1330433 |
tttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtggatgaattggtggaggaagtgaag-----gtcttggagttgggtgttgga |
1330339 |
T |
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| Q |
112 |
tagaactaaagtggcaatgtgtttgttctatgaatggtgttggaacccaaaagaatgccttatgcgataagtggaggtttttcctcgagtttcagtgaat |
211 |
Q |
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| T |
1330338 |
tagaactaaagtgtcggcatgtttattctatgaatggtgttggaacccaaaaggatgccttacctgataattgga-gttttttctcgagtttctgtgtat |
1330240 |
T |
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| Q |
212 |
attgacagcgctgttgctggtg |
233 |
Q |
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| T |
1330239 |
attgacagcgctgttgctggtg |
1330218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 29083191 - 29083237
Alignment:
| Q |
134 |
ttgttctatgaatggtgttggaacccaaaagaatgccttatgcgata |
180 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29083191 |
ttgttttatgaatggtgttggaacccaaaagaatgccttttgcgata |
29083237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 41029688 - 41029722
Alignment:
| Q |
131 |
tgtttgttctatgaatggtgttggaacccaaaaga |
165 |
Q |
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| T |
41029688 |
tgtttgttttatgaatggtgttggaacccaaaaga |
41029722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 48721853 - 48721891
Alignment:
| Q |
134 |
ttgttctatgaatggtgttggaacccaaaagaatgcctt |
172 |
Q |
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| T |
48721853 |
ttgttctatgaatggtgttggaatccgaaagaatgcctt |
48721891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 42748768 - 42748720
Alignment:
| Q |
130 |
gtgtttgttctatgaatggtgttggaacccaaaagaatgccttatgcga |
178 |
Q |
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| T |
42748768 |
gtgtttgtactatgaatggtgttggaatccaaaggaatgtcttttgcga |
42748720 |
T |
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