View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17603_low_14 (Length: 227)
Name: NF17603_low_14
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 24108845 - 24108651
Alignment:
| Q |
18 |
gtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24108845 |
gtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaag |
24108746 |
T |
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| Q |
118 |
aaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtctaagaatttcgtatcaatatgtgacatttcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
24108745 |
aaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtttaagaaattcgtatcaatatgtgacatttcat |
24108651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 24116548 - 24116361
Alignment:
| Q |
22 |
acagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaagaaat |
121 |
Q |
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||||||||||| ||||| || || | ||||||||| | |||||||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
24116548 |
acagggtactccgaggaaaacttgtggtcttgtgctaatgttatgatgaaatcgtgcattcaaatttgtggagatggacacatggaagtttttaagaaat |
24116449 |
T |
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| Q |
122 |
tttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtctaagaatttcgtatcaatatgtgacatttcat |
212 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| || | |||||| || |||||||||||||||||||||| |
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| T |
24116448 |
tttcaagtttat---atcaatctagggtttcatgtattgctcaagaatttctcaaaatttaagaaatttgtatcaatatgtgacatttcat |
24116361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 23693381 - 23693572
Alignment:
| Q |
18 |
gtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaag |
117 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| |||||||||||||| | |
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| T |
23693381 |
gtgtacggggtactccgaggataagttattgtcttgtgcccatgttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatg |
23693480 |
T |
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| Q |
118 |
aaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtctaagaatttcgtatcaatatgtgacatttcat |
212 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||| || || |||||||||||| ||||||||| |
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| T |
23693481 |
aaattttcaagtttat---atcaatgtagggtttcatgtattgctcaagaatttctggaagtttaaaaaatttgtatcaatatgttacatttcat |
23693572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 23711821 - 23712012
Alignment:
| Q |
18 |
gtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaag |
117 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| |||||||||||||| | |
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| T |
23711821 |
gtgtacggggtactccgaggataagttattgtcttgtgcccatgttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatg |
23711920 |
T |
|
| Q |
118 |
aaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtctaagaatttcgtatcaatatgtgacatttcat |
212 |
Q |
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|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||| || || |||||||||||| ||||||||| |
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| T |
23711921 |
aaattttcaagtttat---atcaatgtagggtttcatgtattgctcaagaatttctggaagtttaaaaaatttgtatcaatatgttacatttcat |
23712012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 23730277 - 23730468
Alignment:
| Q |
18 |
gtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaag |
117 |
Q |
| |
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|||||| |||||||| ||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| |||||||||||||| | |
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| T |
23730277 |
gtgtacggggtactccgaggataagttattgtcttgtgcccatgttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatg |
23730376 |
T |
|
| Q |
118 |
aaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtctaagaatttcgtatcaatatgtgacatttcat |
212 |
Q |
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|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||| || || |||||||||||| ||||||||| |
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| T |
23730377 |
aaattttcaagtttat---atcaatgtagggtttcatgtattgctcaagaatttctggaagtttaaaaaatttgtatcaatatgttacatttcat |
23730468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 23748732 - 23748923
Alignment:
| Q |
18 |
gtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaag |
117 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| |||||||||||||| | |
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| T |
23748732 |
gtgtacggggtactccgaggataagttattgtcttgtgcccatgttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatg |
23748831 |
T |
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| Q |
118 |
aaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtctaagaatttcgtatcaatatgtgacatttcat |
212 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||| || || |||||||||||| ||||||||| |
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| T |
23748832 |
aaattttcaagtttat---atcaatgtagggtttcatgtattgctcaagaatttctggaagtttaaaaaatttgtatcaatatgttacatttcat |
23748923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 24614822 - 24615008
Alignment:
| Q |
18 |
gtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaag |
117 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||||| |||||||| | ||||||| |||||||||| |||||||| |||||||||||||||| |
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| T |
24614822 |
gtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaagtcgtgcagtcaaatttgtggagatggaatcatggaagtttttaag |
24614921 |
T |
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| Q |
118 |
aaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtctaagaatttcgtatcaatatgtgacattt |
209 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||| || |||| ||||||| |||||| |
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| T |
24614922 |
aaattttcaagtttat---atcaatctagggtttcatgtattgctcaagaatatctcga--tttaagaaatttgtattaatatgtaacattt |
24615008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 23689923 - 23690103
Alignment:
| Q |
18 |
gtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaag |
117 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||| ||||||||| | |||||||||||||||||| |||| ||| ||||||||| |||||| |
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| T |
23689923 |
gtgtacagggtactctgaggaaaacttgttgtcttgtgcacacgttatgatgaaatcgtgcattcaaatttgtggagagggaatcatggaagtctttaag |
23690022 |
T |
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| Q |
118 |
aaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtctaagaatttcgtatcaatatg |
201 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| |||||||||||||| | |||| |||||| || || |||||||| |
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| T |
23690023 |
aaattttcaagtttat---atcaatgtagggtttcatgtgttgctcaagaatttttgaaagtttaagaaatttgtgtcaatatg |
23690103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 24062160 - 24062340
Alignment:
| Q |
18 |
gtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaag |
117 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||| ||||||||| | |||||||||||||||||| |||| ||| ||||||||| |||||| |
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| T |
24062160 |
gtgtacagggtactctgaggaaaacttgttgtcttgtgcacacgttatgatgaaatcgtgcattcaaatttgtggagagggaatcatggaagtctttaag |
24062259 |
T |
|
| Q |
118 |
aaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttctcgaagtctaagaatttcgtatcaatatg |
201 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||| |||||||||||||| | |||| |||||| || || |||||||| |
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| T |
24062260 |
aaattttcaagtttat---atcaatgtagggtttcatgtgttgctcaagaatttttgaaagtttaagaaatttgtgtcaatatg |
24062340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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