View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17603_low_15 (Length: 226)
Name: NF17603_low_15
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 45348577 - 45348353
Alignment:
| Q |
1 |
aaagtcttctaatttggttcatttttgtctgccgtatattttgaaagcagaagagtgttctaatttgttttgttaatggtcttacttttgcttaaaattt |
100 |
Q |
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| T |
45348577 |
aaagtcttctaatttggttcatttttgtctgccgtatattttgaaagcagaagagtgttctaatttgttttgttaatggtcttagttttgcttaaaattt |
45348478 |
T |
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| Q |
101 |
tagatacagaatattggttctacaaagtcaatgaacgtaattattcaagcagctgcnnnnnnnncgttgaccttaaaaaa-gacaaaagagtggaacttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
45348477 |
tagatacagaatattggttctacaaagtcaatgaacgtaattattcaagcagctgc-aaaaaaacgttgaccttaaaaaacgacaaaagagtggaacttt |
45348379 |
T |
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| Q |
200 |
gactattcgtgtttgtgtgatgatgt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
45348378 |
tactattcgtgtttgtgtgatgatgt |
45348353 |
T |
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