View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17603_low_3 (Length: 395)
Name: NF17603_low_3
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 32772368 - 32771974
Alignment:
| Q |
1 |
ttcaatctctctcccttttccatcaccatcttgataagccaccaaccatcttgcaaatgcagctccacatgaaccttctctactatgttcaccaccagac |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32772368 |
ttcaatctctcttccttttccatcaccatcttgataagccaccaaccatcttgcaaatgcagctccacatgaaccttctctactatgttcaccactagat |
32772269 |
T |
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| Q |
101 |
cttactcctcttcttccttctaagctacccttttcctctttgtctctttcatttgacatacaagaagacctacaaggaaaaaagcaactaaactctctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32772268 |
cttactcctcttcttccttctaagctacccttttcctctttgtctctttcatttgacatacaagaagacctacaaggaaaaaagcaactaaactctctca |
32772169 |
T |
|
| Q |
201 |
aagcttcacaaattgtcaaaggctaatgaacccatctctgattcctatttttcaaactctcttgttgcaatctttgatgattttgttactatctttgtct |
300 |
Q |
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|||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||| ||| | ||||| || |
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| T |
32772168 |
aagcttcacatattgtcaaaggcaaatgaacccatctttgattcctatgtttcaaacactcttgttgcaaactttgatgattttgatacaaactttgact |
32772069 |
T |
|
| Q |
301 |
attctgtctagttagatctgtatttgttccttctccaccgcctcttctaaaactagcttctcctctacgctttgacctttacctcatttccttcc |
395 |
Q |
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|||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||| | |||||||||| ||||||||| ||||| |
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| T |
32772068 |
attctgtctagttagatctggatttgttccttcaccaccacctcttctaaaactagcttcacctcttctctttgaccttgacctcattttcttcc |
32771974 |
T |
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