View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17603_low_5 (Length: 370)
Name: NF17603_low_5
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 193 - 355
Target Start/End: Original strand, 12271461 - 12271623
Alignment:
| Q |
193 |
gcattcttgtcaaagattaatgaagtcaattttgatgcataatatattattgtgatgcatacaagttgaacgggtaaaatatcacttcaacgaataaaat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12271461 |
gcattcttgtcaaagattaatgaagtcaattttgatgcataatatattattgtgatgcatacaagttgaacgggtaaaatatcacttcaacgaataaaat |
12271560 |
T |
|
| Q |
293 |
taatgatcaatctacgattcaaaatcttacggattctaagttgatatatttaatgtttaaagt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12271561 |
taatgatcaatctacgattcaaaatcttacggattctaagttgatatatttaatgtttaaagt |
12271623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 12271276 - 12271419
Alignment:
| Q |
8 |
gagcagagatcggttaccgtggcggagaagcaaccggtggcggatggaaagagttatggtgaccggttaactggaattgatgttggtaccaagaactcta |
107 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12271276 |
gagcaaagaacggttaccgtggcggagaagcaaccggtggcggatggaaagagttatggtgaccggttaactggaattgatgttggtacgaagaactcta |
12271375 |
T |
|
| Q |
108 |
atggtgctgttattggtattcctgtttggtggaattaccctaac |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12271376 |
atggtgctgttattggtattcctgtttggtggaattaccctaac |
12271419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 12287948 - 12288081
Alignment:
| Q |
14 |
agatcggttaccgtggcggagaagcaaccggtggcggatggaaagagttatggtgaccggttaactggaattgatgttggtaccaagaactctaatggtg |
113 |
Q |
| |
|
||||||||||| |||||||| ||| || | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12287948 |
agatcggttacggtggcggaaaaggaaacactggcggatgggaagagttatggtgatcggttaactggaattgatgttggtaccaagaactctaatggag |
12288047 |
T |
|
| Q |
114 |
ctgttattggtattcctgtttggtggaattaccc |
147 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| |
|
|
| T |
12288048 |
gtgttattggtattccttttaggtggaattaccc |
12288081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 193 - 355
Target Start/End: Original strand, 12257457 - 12257616
Alignment:
| Q |
193 |
gcattcttgtcaaagattaatgaagtcaattttgatgcataatatattattgtgatgcatacaagttgaacgggtaaaatatcacttcaacgaataaaat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||| |||||| | |
|
|
| T |
12257457 |
gcattcttgtcaaagattaatgaagtcaattttgatgcacaatatattattgtgatacatacaagt-------gtaaaatatcatttcaacaaataaact |
12257549 |
T |
|
| Q |
293 |
taatgatcaatctacgattca----aaatcttacggattctaagttgatatatttaatgtttaaagt |
355 |
Q |
| |
|
|||||||||||||| |||||| | |||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
12257550 |
taatgatcaatctaagattcaacttagatcttatagattctaagttgatagatttaatgtttaaagt |
12257616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 193 - 355
Target Start/End: Original strand, 12264849 - 12265008
Alignment:
| Q |
193 |
gcattcttgtcaaagattaatgaagtcaattttgatgcataatatattattgtgatgcatacaagttgaacgggtaaaatatcacttcaacgaataaaat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||| |||||| | |
|
|
| T |
12264849 |
gcattcttgtcaaagattaatgaagtcaattttgatgcacaatatattattgtgatacatacaagt-------gtaaaatatcatttcaacaaataaact |
12264941 |
T |
|
| Q |
293 |
taatgatcaatctacgattca----aaatcttacggattctaagttgatatatttaatgtttaaagt |
355 |
Q |
| |
|
|||||||||||||| |||||| | |||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
12264942 |
taatgatcaatctaagattcaacttagatcttatagattctaagttgatagatttaatgtttaaagt |
12265008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 12283085 - 12283235
Alignment:
| Q |
1 |
tgtgcaggagcagagatcggttaccgtggcggagaagcaaccggtggcggatggaaagagttatggtgaccggttaactggaattgatgttggtaccaag |
100 |
Q |
| |
|
||||| |||| | ||||| ||||||||||||||||||||| ||||| | ||||||||| || ||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
12283085 |
tgtgccggaggaaagatcagttaccgtggcggagaagcaaacggtgatgcatggaaagaattgtggtggccggttaactggaatggatgttggtgtcaag |
12283184 |
T |
|
| Q |
101 |
aactctaatggtgctgttattggtattcctgtttggtggaattaccctaac |
151 |
Q |
| |
|
|||| |||||||| || ||||||| |||| |||||||||||||||||||| |
|
|
| T |
12283185 |
aactgtaatggtgttgctattggttttcccttttggtggaattaccctaac |
12283235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 12257314 - 12257414
Alignment:
| Q |
47 |
gcggatggaaagagttatggtgaccggttaactggaattgatgttggtaccaagaactctaatggtgctgttattggtattcctgtttggtggaattacc |
146 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
12257314 |
gcggatggaaagaattatggtggtcggttaactggaatggatgttggtaccaaggactctaatggtgttgctattggtattccgttttggtggaattacc |
12257413 |
T |
|
| Q |
147 |
c |
147 |
Q |
| |
|
| |
|
|
| T |
12257414 |
c |
12257414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 12264706 - 12264806
Alignment:
| Q |
47 |
gcggatggaaagagttatggtgaccggttaactggaattgatgttggtaccaagaactctaatggtgctgttattggtattcctgtttggtggaattacc |
146 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
12264706 |
gcggatggaaagaattatggtggtcggttaactggaatggatgttggtaccaaggactctaatggtgttgctattggtattccgttttggtggaattacc |
12264805 |
T |
|
| Q |
147 |
c |
147 |
Q |
| |
|
| |
|
|
| T |
12264806 |
c |
12264806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 12267359 - 12267512
Alignment:
| Q |
1 |
tgtgcaggagcagagatcggttaccgtggcggagaagcaaccggtggcggatggaaagagttatggtgaccggttaactggaattga---tgttggtacc |
97 |
Q |
| |
|
||||| |||| | ||||||||||||||||||||||||||| ||||| | ||||||||| || ||||| ||||||||||||||| || ||||||| | |
|
|
| T |
12267359 |
tgtgccggaggaaagatcggttaccgtggcggagaagcaaacggtgatgcatggaaagaattgtggtggccggttaactggaatggatattgttggtgtc |
12267458 |
T |
|
| Q |
98 |
aagaactctaatggtgctgttattggtattcctgtttggtggaattaccctaac |
151 |
Q |
| |
|
|||||||||||||||| || ||||||| |||| |||| ||||||||||||||| |
|
|
| T |
12267459 |
aagaactctaatggtgttgctattggttttcccttttgatggaattaccctaac |
12267512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 29198045 - 29198139
Alignment:
| Q |
55 |
aaagagttatggtgaccggttaactggaattgatgttggtaccaagaactctaatggtgctgttattggtattcctgtttggtggaattacccta |
149 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29198045 |
aaagagttatggtgatcggttaactggaattgatgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattacccta |
29198139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University