View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17603_low_6 (Length: 343)
Name: NF17603_low_6
Description: NF17603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17603_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 1496362 - 1496655
Alignment:
| Q |
1 |
tttctaactgtaggtgatgctgttgcaacttttggtccaaaggggttagatttatgaagaacacaacataataaccattccaattgaagtgtgtatttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1496362 |
tttctaactgtaggtgatgctgttgcaacttttggtccaaaggggttagatttatgaagaacacaacataataaccattccaactgaagtgtgtatttaa |
1496461 |
T |
|
| Q |
101 |
ataaaatataaagaaa-gggtgtgtgaaactattaagggagctcttaggaacaatgaaggggcacgttgatttgttttctttagttttgtttattctcat |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1496462 |
ataaaatataaagaaaagggtgtgtgaaactattaagggagctcttaggaacaatgaaggggcacgttgatttgttttctttagttttgtttattctcat |
1496561 |
T |
|
| Q |
200 |
tgatttctagttccagttgatgtgatgtatagtcataaggaaagaaatacatgttttttatgttgattatactactatggtcttggatataagc |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1496562 |
tgatttctagttccagttgatgtgatgtatagtcataaggaaagaaatacatgttttttatgttgattatactactatggtcttggatataagc |
1496655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University