View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17604_high_12 (Length: 338)
Name: NF17604_high_12
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_high_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 34330857 - 34330536
Alignment:
| Q |
17 |
atatatgaaagcaaaaggaatttcataagcaaccaacaacacaacctagtagttttctcagattcatttcaatttcatctgaactcagcttttctagtta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34330857 |
atatatgaaagcaaaaggaatttcataagcaaccaacaacacaacctagtagttttctcagattcatttcaatttcatctgaactcagcttttctagtta |
34330758 |
T |
|
| Q |
117 |
caagtatactaaactaatataacatcactgaaagaaagaaagnnnnnnnnngtgcatgaaacaagatatggaaagaacaacaacaatgaaaacctttgat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34330757 |
caagtatactaaactaatataacatcactgaaagaaagaaagaaaaaaacagtgcatgaaacaagatatggaaagaacaacaacaataaaaacctttgat |
34330658 |
T |
|
| Q |
217 |
tgtaacctgcctccaaaatcaccaaccatcttaagagatatagatgcatctttctcatcctatctcacaccccaaaagccaaataatcataatcaccacc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34330657 |
tgtaacctgcctccaaaatcaccaaccatcttaagagatatagatgcatctttctcatcctatctcacaccccaaaagccaaataatcataatcaccacc |
34330558 |
T |
|
| Q |
317 |
acaaactcgacgatcccacctc |
338 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34330557 |
acaaactcgacgatcccacctc |
34330536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University