View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_high_15 (Length: 313)
Name: NF17604_high_15
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 14201129 - 14200833
Alignment:
| Q |
1 |
cgtactgcatcaccacaatcacagttaaagatcaaagccttcatttcaccaccaagatcttcaaacaaggcttctaaacctccgttaccgtctctgtcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14201129 |
cgtactgcatcaccacaatcacagttaaagatcaaagccttcatttctccaccaagatcttcaaacaaggcttctaaacctccattaccgtctctgtcaa |
14201030 |
T |
|
| Q |
101 |
aatcagcatctgtctcttcctcatcctctgcatcatcgacgtcatcttcatcatcttattgcagcgttaatggtggaggttccagccagaagcacacgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14201029 |
aatcagcatctgtctcttcctcatcctctgcatcatcgacgtcatcttcatcatcttattgcagcgttaatggtggaggttccagccagaagtacacgac |
14200930 |
T |
|
| Q |
201 |
agagcagcctgtagtttaccgatgcgttcatcatatgtcacaacagactgtcaatcatggaaacatggagagatcttctgggaggaatgttcctctg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14200929 |
agagcagcctgtagtttaccgatgcgttcatcatatgtcacaacagactgtcaatcatggaaacatggagagatcttctgggaggaatgttcctctg |
14200833 |
T |
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