View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_high_17 (Length: 278)
Name: NF17604_high_17
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 47522797 - 47523043
Alignment:
| Q |
18 |
ggaaggtataagggaaaggtattcacttgtttcttggttgataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaatgtt |
117 |
Q |
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| T |
47522797 |
ggaaggtaaaagagaaaggtattcactagtttcttggttgataaagaatcaagttttggtttcagggactaatgtattctgtcgtggtagaaacaatgtt |
47522896 |
T |
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| Q |
118 |
gtcaaaagagggagtttattttatgatggcatagtttgtgattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagac |
217 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
47522897 |
gtcaaaagagggggtttattttctgatggcatagtttgtgattgttgtcgtgttaatttcaatgtcactggatttgaggctcatgctggttgtacaagac |
47522996 |
T |
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| Q |
218 |
atagaccatccactactatcttgttggaagacggaaggtcattgttg |
264 |
Q |
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| T |
47522997 |
atagaccaaccactagtatcttgttgggagatggaaggtcgttgttg |
47523043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 47528303 - 47528553
Alignment:
| Q |
14 |
agagggaaggtataagggaaaggtattcacttgtttcttggttgataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaa |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||| | ||| ||||||||||||| |
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| T |
47528303 |
agagagaaggtataagggaaaggtattcacttgtttcttggttgataaagaataaagttttggtttcagggactaatgtgctctgtcgtggtagtaacaa |
47528402 |
T |
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| Q |
114 |
tgttgtcaaaagagggagtttattttatgatggcatagtttgtgattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtaca |
213 |
Q |
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| T |
47528403 |
tgttgttacaagcgggagtatatattgtgatggtattgtttgtgattgttgtaatgttaatttcactctcgctggatttaaggatcatgctggttgtaca |
47528502 |
T |
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| Q |
214 |
agacatagaccatccactactatcttgttggaagacggaaggtcattgttg |
264 |
Q |
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| T |
47528503 |
agacctacatcatccactggtatcttcttggaagatggaaggtcgttgttg |
47528553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 264
Target Start/End: Original strand, 47550018 - 47550232
Alignment:
| Q |
54 |
gttgataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaatgttgtcaaaagagggagtttattttatgatggcat---- |
149 |
Q |
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| T |
47550018 |
gttgataaaggatggagttttggtttctgggactattgttttctgccgtggtaaggataatgttaccaaaagagggagtatatcttgtgaaggtatgtat |
47550117 |
T |
|
| Q |
150 |
agtttgtgattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagacatagaccatccactactatcttgttggaagac |
249 |
Q |
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| T |
47550118 |
agcttgtgattgttgtcaggttaaattcactctcaccaaatttgaggctcatgcttgttgtacaaaacctagaccatccaaaagtatcttcttgcaagac |
47550217 |
T |
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| Q |
250 |
ggaaggtcattgttg |
264 |
Q |
| |
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||| ||||||||| |
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| T |
47550218 |
agaacttcattgttg |
47550232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 44871486 - 44871237
Alignment:
| Q |
14 |
agagggaaggtataagggaaaggtattcacttgtttcttggttgataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaa |
113 |
Q |
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|||||| ||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||| |||||| |||||| ||| |||||||| | || |
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| T |
44871486 |
agaggggaggtataagggaaagttattccattgtttcttggttgatagagaataaagttttggtttcaggaactcatgtgttctgtcgtggtagtgaaaa |
44871387 |
T |
|
| Q |
114 |
tgttgtcaaaagagggagtttattttatgatggcatagtttgtgattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtaca |
213 |
Q |
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| ||||||||||||||||| |||||| |||||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
44871386 |
tattgtcaaaagagggagtatattttctgatggtatagtttgtaactgttgtcgtgttaatttcaccgtcagtggatttgaggctcatgctggttgtaca |
44871287 |
T |
|
| Q |
214 |
agacatagaccatccactactatcttgttggaagacggaaggtcattgtt |
263 |
Q |
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||||| |||||||||| || |||||||||||||||||||||||||||||| |
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| T |
44871286 |
agacacagaccatccattagtatcttgttggaagacggaaggtcattgtt |
44871237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 44 - 264
Target Start/End: Complemental strand, 9820648 - 9820428
Alignment:
| Q |
44 |
ttgtttcttggttgataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaatgttgtcaaaagagggagtttattttatga |
143 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || |||| |||||| ||| || |||||||| |||||||||||||| ||||| |||| ||| |
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| T |
9820648 |
ttgtttcttggttgataaagaatcaagttttggtttcagggactaatgtgttctgtcagggcagtaacaaagttgtcaaaagaggaagtttgttttctga |
9820549 |
T |
|
| Q |
144 |
tggcatagtttgtgattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagacatagaccatccactactatcttgttg |
243 |
Q |
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|| ||||||||||||||||||| ||||| || |||||||| || || ||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9820548 |
tgctatagtttgtgattgttgtcatgttacctttactatcaccgggttcgagtctcatgctggttgtacaagacatagaccatccactagtatcttgttg |
9820449 |
T |
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| Q |
244 |
gaagacggaaggtcattgttg |
264 |
Q |
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||||| ||||| || |||||| |
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| T |
9820448 |
gaagatggaagatcgttgttg |
9820428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 44 - 264
Target Start/End: Original strand, 9853332 - 9853552
Alignment:
| Q |
44 |
ttgtttcttggttgataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaatgttgtcaaaagagggagtttattttatga |
143 |
Q |
| |
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| T |
9853332 |
ttgtttcttggttgataaagaatcaagttttggtttcagggactaatgtgttctgtcagggcagtaacaaagttgtcaaaagaggaagtttgttttctga |
9853431 |
T |
|
| Q |
144 |
tggcatagtttgtgattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagacatagaccatccactactatcttgttg |
243 |
Q |
| |
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|| ||||||||||||||||||| ||||| || |||||||| || || ||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9853432 |
tgctatagtttgtgattgttgtcatgttacctttactatcaccgggttcgagtctcatgctggttgtacaagacatagaccatccactagtatcttgttg |
9853531 |
T |
|
| Q |
244 |
gaagacggaaggtcattgttg |
264 |
Q |
| |
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||||| ||||| || |||||| |
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| T |
9853532 |
gaagatggaagatcgttgttg |
9853552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 265
Target Start/End: Complemental strand, 20683315 - 20683158
Alignment:
| Q |
108 |
taacaatgttgtcaaaagagggagtttattttatgatggcatagtttgtgattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggt |
207 |
Q |
| |
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|||||||||| |||||||||| ||| ||| || ||| | |||| |||||||||||||| |||||| |||||| |||| ||| || ||||||||| | |
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| T |
20683315 |
taacaatgttatcaaaagaggaagtatatcttctgaatgtatagcttgtgattgttgtcatgttaaattcactctcaccatattcgatgctcatgcttct |
20683216 |
T |
|
| Q |
208 |
tgtacaagacatagaccatccactactatcttgttggaagacggaaggtcattgttga |
265 |
Q |
| |
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|||||||||||||||||||||| | |||||| ||||| |||| || |||||||||| |
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| T |
20683215 |
tgtacaagacatagaccatccaaaagtatcttcttggaggacgaaacttcattgttga |
20683158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 21081169 - 21081246
Alignment:
| Q |
187 |
ggatttgaggctcatgctggttgtacaagacatagaccatccactactatcttgttggaagacggaaggtcattgttg |
264 |
Q |
| |
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||||| |||| ||||| || || ||||||||||||||||||||||| |||||| || ||||| ||||||||||||| |
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| T |
21081169 |
ggattagaggttcatgttgtttttacaagacatagaccatccactagtatctttatgaaagacaaaaggtcattgttg |
21081246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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