View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17604_high_19 (Length: 271)

Name: NF17604_high_19
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17604_high_19
NF17604_high_19
[»] chr3 (8 HSPs)
chr3 (1-256)||(9613706-9613961)
chr3 (138-256)||(9352973-9353091)
chr3 (139-209)||(9377205-9377275)
chr3 (139-189)||(9626410-9626460)
chr3 (227-256)||(9340743-9340772)
chr3 (223-256)||(9343917-9343950)
chr3 (227-256)||(9348059-9348088)
chr3 (227-256)||(9369713-9369742)
[»] chr5 (1 HSPs)
chr5 (223-254)||(18571185-18571216)
[»] chr6 (4 HSPs)
chr6 (223-256)||(7012892-7012925)
chr6 (223-256)||(7025828-7025861)
chr6 (223-256)||(7029885-7029918)
chr6 (223-256)||(7046911-7046944)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 9613706 - 9613961
Alignment:
Q  1 gtccgtggagacatctgcttgtttaaagggcggttctacgtggtagaaatgtccggaagaacagttaagattggaccagacttgaccatggtattagtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9613706 gtccgtggagacatctgcttgtttaaagggcggttctacgtggtagaaatgtccggaagaacagttaagattggaccagacttgaccatggtattagtgg 9613805  T
Q  101 ctcaacctttatataatcttcttggtgacagtctcatcagaaaaatgctggtggagagcgagggtgagttgttgttattggacatttatcaatcattgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9613806 ctcaacctttatataatcttcttggtgacagtctcatcagaaaaatgctggtggagagcgagggtgagttgttgttattggacatttatcaatcattgta 9613905  T
Q  201 tcaattcagaattgannnnnnnaagcttgatgagaaggagaagaagtgggtgaagt 256  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  9613906 tcaattcagaattgatttttttaagcttgatgagaaggagaagaagtgggtgaagt 9613961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 9353091 - 9352973
Alignment:
Q  138 cagaaaaatgctggtggagagcgagggtgagttgttgttattggacatttatcaatcattgtatcaattcagaattgannnnnnnaagcttgatgagaag 237  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||| ||||| |||| | ||||||||| ||  |       ||||||||||||| |    
T  9353091 cagaaaattgctggtggagaatgagggtgagttgttgttattggacattcatcaaacattttttcaattcagtatcaaattctttaagcttgatgagatg 9352992  T
Q  238 gagaagaagtgggtgaagt 256  Q
    |||||||||||||||||||    
T  9352991 gagaagaagtgggtgaagt 9352973  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 9377275 - 9377205
Alignment:
Q  139 agaaaaatgctggtggagagcgagggtgagttgttgttattggacatttatcaatcattgtatcaattcag 209  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||||| ||||  |||| | |||||||||    
T  9377275 agaaaattgctggtggagagtgagggtgagttgttgttactggacattcatcagacattttttcaattcag 9377205  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 9626410 - 9626460
Alignment:
Q  139 agaaaaatgctggtggagagcgagggtgagttgttgttattggacatttat 189  Q
    |||||| || |||||||||| || ||||||||||||||| |||||||||||    
T  9626410 agaaaactgttggtggagagtgacggtgagttgttgttagtggacatttat 9626460  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 9340772 - 9340743
Alignment:
Q  227 ttgatgagaaggagaagaagtgggtgaagt 256  Q
    ||||||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagt 9340743  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 9343950 - 9343917
Alignment:
Q  223 aagcttgatgagaaggagaagaagtgggtgaagt 256  Q
    ||||||||||||| ||||||||||||||||||||    
T  9343950 aagcttgatgagatggagaagaagtgggtgaagt 9343917  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 9348088 - 9348059
Alignment:
Q  227 ttgatgagaaggagaagaagtgggtgaagt 256  Q
    ||||||||||||||||||||||||||||||    
T  9348088 ttgatgagaaggagaagaagtgggtgaagt 9348059  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 9369742 - 9369713
Alignment:
Q  227 ttgatgagaaggagaagaagtgggtgaagt 256  Q
    ||||||||||||||||||||||||||||||    
T  9369742 ttgatgagaaggagaagaagtgggtgaagt 9369713  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 254
Target Start/End: Complemental strand, 18571216 - 18571185
Alignment:
Q  223 aagcttgatgagaaggagaagaagtgggtgaa 254  Q
    ||||||||||||||||||||||||||||||||    
T  18571216 aagcttgatgagaaggagaagaagtgggtgaa 18571185  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 7012925 - 7012892
Alignment:
Q  223 aagcttgatgagaaggagaagaagtgggtgaagt 256  Q
    |||||| |||||||||||||||||||||||||||    
T  7012925 aagcttaatgagaaggagaagaagtgggtgaagt 7012892  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 7025861 - 7025828
Alignment:
Q  223 aagcttgatgagaaggagaagaagtgggtgaagt 256  Q
    |||||| |||||||||||||||||||||||||||    
T  7025861 aagcttaatgagaaggagaagaagtgggtgaagt 7025828  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 7029918 - 7029885
Alignment:
Q  223 aagcttgatgagaaggagaagaagtgggtgaagt 256  Q
    |||||| |||||||||||||||||||||||||||    
T  7029918 aagcttaatgagaaggagaagaagtgggtgaagt 7029885  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 7046944 - 7046911
Alignment:
Q  223 aagcttgatgagaaggagaagaagtgggtgaagt 256  Q
    |||||| |||||||||||||||||||||||||||    
T  7046944 aagcttaatgagaaggagaagaagtgggtgaagt 7046911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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