View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_high_20 (Length: 265)
Name: NF17604_high_20
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 6856196 - 6855949
Alignment:
| Q |
1 |
catcttaacgttttcctttcaaaacttgccatttttatctgtgctatatgttaatgactaaaattcgtcaaatttcctctcaaaatttgataacaattta |
100 |
Q |
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| T |
6856196 |
catcttagcgttttccttttaaaacttgccatttttatctgtgctatatgttaatgactaaaattcgtcacatttcctctcaaaatttgataacaattta |
6856097 |
T |
|
| Q |
101 |
aatagttaacacaatttaaatatatggttaattatatctaatgattatttgatgaatatagcaagatgatgtataaccaattaaccatattaatttaaca |
200 |
Q |
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| T |
6856096 |
aatagttaacacaatttaaatatatggttaattatatctaatgattatttgatgaatacagcaagatgatgtataaccaattaaccatattaatttaaca |
6855997 |
T |
|
| Q |
201 |
cagttaaccatgattttaaacatgagtatgatttttaggtgtacaaat |
248 |
Q |
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| T |
6855996 |
cagttaaccatgattttaaacatgagtatgatttttaggtgtacaaat |
6855949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 8458198 - 8458154
Alignment:
| Q |
86 |
tttgataacaatttaaatagttaacacaatttaaatatatggtta |
130 |
Q |
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| T |
8458198 |
tttgacaacaatttgaatagttaacacagtttaaatatatggtta |
8458154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 30066870 - 30066822
Alignment:
| Q |
82 |
aaaatttgataacaatttaaatagttaacacaatttaaatatatggtta |
130 |
Q |
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| T |
30066870 |
aaaatttgacaacaatttagatagttaacacagtttaaatatgtggtta |
30066822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 45886879 - 45886836
Alignment:
| Q |
84 |
aatttgataacaatttaaatagttaacacaatttaaatatatgg |
127 |
Q |
| |
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||||||| ||||| |||||||||||| ||||||||||||||||| |
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| T |
45886879 |
aatttgacaacaacttaaatagttaatacaatttaaatatatgg |
45886836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 32642881 - 32642936
Alignment:
| Q |
82 |
aaaatttgataacaatttaaatagttaacacaatttaaatatatggttaattatat |
137 |
Q |
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|||| ||||||||| ||||||| | ||||||| |||||||||||| |||||||||| |
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| T |
32642881 |
aaaagttgataacattttaaatggctaacacagtttaaatatatgattaattatat |
32642936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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