View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17604_high_21 (Length: 262)
Name: NF17604_high_21
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 6153726 - 6153966
Alignment:
| Q |
10 |
agattatactgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtt |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6153726 |
agattatattgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtcaagaatgtt |
6153825 |
T |
|
| Q |
110 |
tgtccagtctgtaaggagatagctctgaggatttatgatgaagatgaataattgtttacttgagtggagattgttggtcttttaagtgtgagttaaaaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
6153826 |
tgtccagtctgtaaggagatagctctgaggatttatgatgaagatgaataattgtttacttgagtggagattgttggtgttttaagtatgagttaaaagt |
6153925 |
T |
|
| Q |
210 |
ctcgcattaaattgaaaaatagac-atccatatataaatgt |
249 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
6153926 |
ctcgcattgaattgaaaaatagacggtcgatatataaatgt |
6153966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 6147489 - 6147597
Alignment:
| Q |
10 |
agattatactgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtt |
109 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |||||| |||| | ||||||| |||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
6147489 |
agattatattgatggggagcatattggaagacttaattgtactcac------acatatcattttgattgcatcgaacaatggttgggggtgaagaatgtt |
6147582 |
T |
|
| Q |
110 |
tgtccagtctgtaag |
124 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6147583 |
tgtccagtctgtaag |
6147597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 33800591 - 33800483
Alignment:
| Q |
10 |
agattatactgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtt |
109 |
Q |
| |
|
||||| || |||||||||| ||||||| ||||||||||| | |||| |||||||||||| ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
33800591 |
agattttattgatggggagtgtattgggagacttgattgcaatcac------atatatcatcttaactgcatcaaacaatggttggaggagaagaatgtt |
33800498 |
T |
|
| Q |
110 |
tgtccagtctgtaag |
124 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
33800497 |
tgtccaatctgtaag |
33800483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 6121040 - 6121114
Alignment:
| Q |
62 |
atatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaaggagatagctctg |
136 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
6121040 |
atatttcatcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggagacagctctg |
6121114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 6128294 - 6128402
Alignment:
| Q |
10 |
agattatactgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtt |
109 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| | || ||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| | |
|
|
| T |
6128294 |
agattatattgatggggagcatattggaagacttcactg----cac--tcacatatatcatcttgattgcatcaaacaatggtttgaggtgaagaatgct |
6128387 |
T |
|
| Q |
110 |
tgtccagtctgtaag |
124 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
6128388 |
tgtccattctgtaag |
6128402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 33729432 - 33729366
Alignment:
| Q |
58 |
tcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
124 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
33729432 |
tcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgtccaatctgtaag |
33729366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 9886570 - 9886623
Alignment:
| Q |
67 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctg |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| |||||| |||| |
|
|
| T |
9886570 |
tcatcttgactgcatcaaacaatggttggagttgaagaatgtctgtccaatctg |
9886623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 9884863 - 9884815
Alignment:
| Q |
67 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtcca |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| | |||||| |
|
|
| T |
9884863 |
tcatcttgactgcatcaaacaatggttggagttgaagaatttatgtcca |
9884815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University