View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_high_23 (Length: 250)
Name: NF17604_high_23
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_high_23 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 40399 - 40203
Alignment:
| Q |
1 |
cttatttatctctctacaaaaaacatttaagaatatcactgacaaaacaatatagttgataatgtattgatcttttttctcaaaataaaaaatgtattga |
100 |
Q |
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| T |
40399 |
cttatttatctctctacaaaaaacatttaagaatatcactgacaaaacaatatagttgataatgcattgatcttttttctcaaaataaaaaatgtattga |
40300 |
T |
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| Q |
101 |
tctttgaaaacattaagaaaatataacaatttttctacaaaattgacaattaaaaagaaacataaagtaattaacaagttacattttaattttccct |
197 |
Q |
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| T |
40299 |
tctttgaaaacattaagaaaatataacaatttttctacaaaagtgacaattaaaaagaaacataaagtaattaataagttacattttaattttccct |
40203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 40193 - 40165
Alignment:
| Q |
210 |
ttacattttaattggactttcgttatatt |
238 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40193 |
ttacattttaattggactttcgttatatt |
40165 |
T |
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