View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_high_4 (Length: 501)
Name: NF17604_high_4
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 54737325 - 54737801
Alignment:
| Q |
18 |
ctaaggtggataagaatgggaaggttgctaatggtaacaaacgtgttaatggtggtgctgctgctgctaagcgtttcaaggctactgatattgccccagc |
117 |
Q |
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| T |
54737325 |
ctaaggtggataagaatgggaaggttgctaatggtaacaaaggtgttaatggtggtgctgctgctgctaagcgtttcaaggcgactgatattgccccggc |
54737424 |
T |
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| Q |
118 |
aaatgcaaccgaggtctatgcttccatctttacttcttctagaaagtctgaatttaaagaaacatattcttgcaggtctctgcctcttggtagaaattaa |
217 |
Q |
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| T |
54737425 |
aaatgcaaccgaggtctatgcttccatctttacttcttctagaaagtctgaatttaaagaaacatattcttgcaggtctctgcctcttggtagaaattaa |
54737524 |
T |
|
| Q |
218 |
cttgtattttgtgttcaagtttgtactttatattcatgttaaatgtactcaattacaatttgttgtgttcactgttcagttatcaagaannnnnnnnnnn |
317 |
Q |
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| T |
54737525 |
cttgtattttgtattcaagtttgtactttatattcatgttaaatgtactcaattacaatttgttgtgttcactgttcagttatcgagcaatttttttttt |
54737624 |
T |
|
| Q |
318 |
nnacaaagctggatagaacatcaaatgtggacaaaaatttgaatttgaagattttttaattagaaaatgatggattgagcaaaatgttaaaaatttcaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54737625 |
ttacaaagctggatagaacatcaaatgtggacaaaaatttgaatgtgaagattttttaattagaaaatgatggattgagcaaaatgttaaaaatttcaat |
54737724 |
T |
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| Q |
418 |
ggtaaatataaacatgaatacgctaaataataagcagcgcaatgactattgttttcaataacataaggcctttgctt |
494 |
Q |
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| T |
54737725 |
ggtaaatataaacatgaatacactaaataataagcagtgcaatgactattgttttcaataacataaggcctttgctt |
54737801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 54738879 - 54739019
Alignment:
| Q |
76 |
tgctgctgctaagcgtttcaaggctactgatattgccccagcaaatgcaaccgaggtctatgcttccatctttacttcttctagaaagtctgaatttaaa |
175 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||| | || |||| ||||||| |||||||| |||||| |
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| T |
54738879 |
tgctgctgctaagcgttttaaggcgactgatattgccccggcaaatgctaccgaggtctatgcattgattttta---cttctaggaagtctgagtttaaa |
54738975 |
T |
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| Q |
176 |
gaaacatattcttgcaggtctctgcctcttggtagaaattaact |
219 |
Q |
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||||||| ||| ||||| ||| |||||||||||||||||||||| |
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| T |
54738976 |
gaaacatgttcgtgcagatctttgcctcttggtagaaattaact |
54739019 |
T |
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