View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_high_5 (Length: 492)
Name: NF17604_high_5
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Complemental strand, 13328605 - 13328150
Alignment:
| Q |
19 |
ttttaatggcttttccgcatcagctgcgttcgttcttgtgttggctcactgtttctgcaacttttgactacgtttgataagttctttggaggttcccttg |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13328605 |
ttttagtggcttttccgcatcagctgcgttcgttcttgtgttggctcgctgtttctgcaacttttgactacgtttgataagtgctttggaggttcccttg |
13328506 |
T |
|
| Q |
119 |
ttgttggtttccttttccagtaaatcactgttgtattttgcatctacagtggatatccgcccattttatcattgttgtttgaaatgtttgcagttagttt |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13328505 |
ttgttggtttccttttccagtaaatcacttttgtattttgcatctacagtggatatccgcccattttatcattgttgtttgaaaggtttgcagttagttt |
13328406 |
T |
|
| Q |
219 |
attccgatatttgtgtttttatttgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
13328405 |
gttccgatatttgtgtttttatttgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagtttgcccatctcactct |
13328306 |
T |
|
| Q |
319 |
atcgggtcatggattttagattcaggcacttcttctgatcatgtagttggtaatttgtcctttgtttataacttgacgcctcctnnnnnnnnnnnnnnnn |
418 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||| |
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| T |
13328305 |
atggggtcatggattttagattcaggc---gcttctgatcatgtagttggtaatccgtcccttgtttataacttgacacctcctaaaactacctcacaaa |
13328209 |
T |
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| Q |
419 |
nttaccgttgctaatgattctaaggcgcaggttactggtattggtaaagcttcaccttt |
477 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13328208 |
attacccttgctaatgattctaaggcgcaggttattggtattggtaaagcttcaccttt |
13328150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 402
Target Start/End: Complemental strand, 37919953 - 37919792
Alignment:
| Q |
238 |
tatttgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactctatcgggtcatggattttag |
337 |
Q |
| |
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|||||||||||| |||| ||||||||||||| || ||| || ||||| | |||||||| || |||| | ||||||||||| || ||||||||||||| |
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| T |
37919953 |
tatttgatggtttcccaaaaggtttcaacttcggttacattgtctcatttcagtaattctacggtttgcttatctcactctatgggatcatggattttag |
37919854 |
T |
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| Q |
338 |
attcaggcacttcttctgatcatgtagttggtaatttgtcctttgtttataacttgacgcctcct |
402 |
Q |
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|||| || | ||||||||||||||||||||||| |||| || ||||||| ||| | |||||| |
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| T |
37919853 |
attcggg---tgcttctgatcatgtagttggtaatatgtctcttatttataatttgtcacctcct |
37919792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 372
Target Start/End: Original strand, 33831827 - 33831958
Alignment:
| Q |
238 |
tatttgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactctatcgggtcatggattttag |
337 |
Q |
| |
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|||||||||| | |||| ||||||||||||| || ||| |||||||| | |||||||| || |||| | ||||||||||| || ||||||||||||| |
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| T |
33831827 |
tatttgatggcttaccaaaaggtttcaacttcggttacattggctcatttcagtaattctacggtttgcttatctcactctatgggatcatggattttag |
33831926 |
T |
|
| Q |
338 |
attcaggcacttcttctgatcatgtagttggtaat |
372 |
Q |
| |
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|||| || | |||||||| |||||||||||||| |
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| T |
33831927 |
attcggg---tgcttctgattatgtagttggtaat |
33831958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 37074181 - 37074227
Alignment:
| Q |
425 |
gttgctaatgattctaaggcgcaggttactggtattggtaaagcttc |
471 |
Q |
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|||||||||||||||||||| || ||||||||||||||| ||||||| |
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| T |
37074181 |
gttgctaatgattctaaggcacaagttactggtattggtcaagcttc |
37074227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 485
Target Start/End: Complemental strand, 46596663 - 46596598
Alignment:
| Q |
420 |
ttaccgttgctaatgattctaaggcgcaggttactggtattggtaaagcttcacctttttcatctc |
485 |
Q |
| |
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||||| ||||||||| ||||||||| || ||||||||||||||| | || |||||| | ||||||| |
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| T |
46596663 |
ttacccttgctaatggttctaaggcacaagttactggtattggtcaggcatcacctctatcatctc |
46596598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 372
Target Start/End: Original strand, 36997904 - 36998041
Alignment:
| Q |
232 |
tgtttttatttgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactctatcgggtcatgga |
331 |
Q |
| |
|
||||| |||||||||| || |||| ||||||||||||| || ||| |||||||| | |||||||| ||| | | | ||||| ||||| || ||| ||| |
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| T |
36997904 |
tgtttgtatttgatggctgcccaaaaggtttcaacttcggttacattggctcatttcagtaattctacaatctgcttatctcattctatgggatcacgga |
36998003 |
T |
|
| Q |
332 |
ttttagattcaggcacttcttctgatcatgtagttggtaat |
372 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||||| |
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| T |
36998004 |
ttttagattcggg---tgcttctgatcatgtagttggtaat |
36998041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 19825048 - 19824981
Alignment:
| Q |
253 |
caagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactctat |
320 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| | |||||||| ||||||| || ||||||||||| |
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| T |
19825048 |
caagaggtttcaacgtcagtcacattggctcatttcagtaattctacagtttgcctatctcactctat |
19824981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 485
Target Start/End: Original strand, 35023526 - 35023585
Alignment:
| Q |
426 |
ttgctaatgattctaaggcgcaggttactggtattggtaaagcttcacctttttcatctc |
485 |
Q |
| |
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||||||||| ||| ||||| || ||||||||||||||| ||| ||||||||| ||||||| |
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| T |
35023526 |
ttgctaatggttccaaggcacaagttactggtattggtcaagtttcacctttgtcatctc |
35023585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 471
Target Start/End: Complemental strand, 45187300 - 45187249
Alignment:
| Q |
420 |
ttaccgttgctaatgattctaaggcgcaggttactggtattggtaaagcttc |
471 |
Q |
| |
|
|||| |||||||||| ||||||||| || ||||||||||||||| ||||||| |
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| T |
45187300 |
ttactgttgctaatggttctaaggcacaagttactggtattggtcaagcttc |
45187249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 32666092 - 32666041
Alignment:
| Q |
426 |
ttgctaatgattctaaggcgcaggttactggtattggtaaagcttcaccttt |
477 |
Q |
| |
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||||||||| ||||||| | || ||||||||||||||| ||||||||||||| |
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| T |
32666092 |
ttgctaatgcttctaagtcacaagttactggtattggtcaagcttcaccttt |
32666041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 36497942 - 36497988
Alignment:
| Q |
425 |
gttgctaatgattctaaggcgcaggttactggtattggtaaagcttc |
471 |
Q |
| |
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|||||||||| ||||||||| || ||||||||||||||| ||||||| |
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| T |
36497942 |
gttgctaatggttctaaggcacaagttactggtattggtcaagcttc |
36497988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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