View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17604_high_6 (Length: 465)

Name: NF17604_high_6
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17604_high_6
NF17604_high_6
[»] chr3 (4 HSPs)
chr3 (5-449)||(1097927-1098368)
chr3 (5-102)||(16239133-16239231)
chr3 (3-84)||(19925116-19925198)
chr3 (158-218)||(30406483-30406543)
[»] chr5 (5 HSPs)
chr5 (12-116)||(31966786-31966891)
chr5 (2-98)||(19847740-19847837)
chr5 (5-107)||(28887582-28887685)
chr5 (4-107)||(28990513-28990617)
chr5 (5-58)||(7003016-7003069)
[»] scaffold0728 (2 HSPs)
scaffold0728 (1-107)||(1837-1944)
scaffold0728 (1-107)||(6777-6884)
[»] chr1 (2 HSPs)
chr1 (5-84)||(32794112-32794191)
chr1 (4-60)||(1073395-1073451)
[»] chr8 (1 HSPs)
chr8 (4-40)||(38540150-38540186)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 449
Target Start/End: Original strand, 1097927 - 1098368
Alignment:
Q  5 gattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggttgagggtctgcagagtgaacacccaactaattacgaacaagctacca 104  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  1097927 gattttgcaagactggaagaggtaccaaactggagaaaatggtcaacaatggttgagggtctgcagagtgaacatccaaccaattacgaacaagctacca 1098026  T
Q  105 aacataaccaaagagactgcaaaacaaaaacaaatggatgtccaatttgatcgacccacaaccactaacacacaattgagtatcatgttgaatgaccccc 204  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||    
T  1098027 aacataaccaaagagactgcaaaacaaaaacaaatggacgtccaatttgatcgacccacaaccactaacacacagttgagtatcatattgaataaccccc 1098126  T
Q  205 cttcgaaataaatttatcctcgtagacaattctatttc-gaaagagccgtcaagtaaaaactgaaaccttaaaaggaacgtctttccaccaaagaagagc 303  Q
    |||| ||||||||||  | ||||||||||| |||||||  |||||||| ||||  ||||||||||| ||||||   ||||||||||| ||||||||||||    
T  1098127 cttcaaaataaatttgccttcgtagacaatcctatttcaaaaagagccatcaaacaaaaactgaaatcttaaatcaaacgtctttccgccaaagaagagc 1098226  T
Q  304 agcggggaccaactgagcattaggaatgatgggcattctgcatgtaattaagggtgtcgtatgcccatctaaccatgtaagcccctctaatcttttaata 403  Q
    |||||||||||||||||||||||||||||||||||||| |||||    ||||||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  1098227 agcggggaccaactgagcattaggaatgatgggcattccgcatg----taagggtgtggtatgcccttctaaccatataagcccctctaatcttttaata 1098322  T
Q  404 aattaagatgaacaatacaattggcacaagaggtacctaatttcat 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1098323 aattaagatgaacaatacaattggcacaagaggtacctaatttcat 1098368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 16239231 - 16239133
Alignment:
Q  5 gattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggtt-gagggtctgcagagtgaacacccaactaattacgaacaagctac 102  Q
    |||||||||||||| ||||| ||||||||||||| ||| |||||||| ||||||  |||||||||||  |||||||||||| ||   ||||||||||||    
T  16239231 gattttgcaagacctgaagaagtaccaaactgaataaagtggtcaacgatggttaaagggtctgcaggatgaacacccaaccaacgccgaacaagctac 16239133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 19925116 - 19925198
Alignment:
Q  3 gtgattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggttgaggg-tctgcagagtgaacacccaac 84  Q
    ||||||||| |||||| || || |||||||||||||||||||| || |||||||||||||| ||||  || ||||||||||||    
T  19925116 gtgattttggaagacctgaggaagtaccaaactgaagaaaatgatccacaatggttgagggatctgttgaatgaacacccaac 19925198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 30406483 - 30406543
Alignment:
Q  158 acccacaaccactaacacacaattgagtatcatgttgaatgaccccccttcgaaataaatt 218  Q
    |||||||||||||||||||||| ||||  |||||| |||| | ||| ||||||||||||||    
T  30406483 acccacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaatt 30406543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 31966786 - 31966891
Alignment:
Q  12 caagaccggaagaggtaccaaactgaagaaaatggtcaacaatggttgaggg-tctgcagagtgaacacccaactaattacgaacaagctaccaaacata 110  Q
    |||||||  |||| ||||||||||||| ||| ||||| ||||||| |||||| ||||| || |||||||||||| |||||||||| |||||||||||||     
T  31966786 caagacctaaagatgtaccaaactgaataaagtggtccacaatgggtgaggggtctgctgaatgaacacccaaccaattacgaactagctaccaaacatt 31966885  T
Q  111 accaaa 116  Q
    ||||||    
T  31966886 accaaa 31966891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 19847837 - 19847740
Alignment:
Q  2 cgtgattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggttga-gggtctgcagagtgaacacccaactaattacgaacaag 98  Q
    |||||||||||| |||| ||||||||||||||||||||||| || || |||||| |||| || || || || ||||||| || |||||||| ||||||    
T  19847837 cgtgattttgcatgacctgaagaggtaccaaactgaagaaagtgatccacaatgtttgatggatccgctgaatgaacacacagctaattacaaacaag 19847740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 28887685 - 28887582
Alignment:
Q  5 gattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggtt-gagggtctgcagagtgaacacccaactaattacgaacaagctacc 103  Q
    |||||||||||||| ||||| ||||||||||| | | | |||||||| ||||||  |||||| ||||| |||||||||||| ||   |||||||||| ||    
T  28887685 gattttgcaagacctgaagaagtaccaaactgtatatagtggtcaacgatggttaaagggtcagcagaatgaacacccaaccaacgccgaacaagctgcc 28887586  T
Q  104 aaac 107  Q
    ||||    
T  28887585 aaac 28887582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 28990513 - 28990617
Alignment:
Q  4 tgattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggtt-gagggtctgcagagtgaacacccaactaattacgaacaagctac 102  Q
    ||||||||||||||| ||||| ||||||||||||| | | |||||||  ||||||  |||||| ||||| ||||| |||||| ||   |||||||||| |    
T  28990513 tgattttgcaagacctgaagaagtaccaaactgaatatagtggtcaatgatggttaaagggtcagcagaatgaacgcccaaccaacgccgaacaagctgc 28990612  T
Q  103 caaac 107  Q
    |||||    
T  28990613 caaac 28990617  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 7003016 - 7003069
Alignment:
Q  5 gattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggtt 58  Q
    ||||||||| | || ||||| |||||||||||||||||||| || |||||||||    
T  7003016 gattttgcatgtcctgaagacgtaccaaactgaagaaaatgatccacaatggtt 7003069  T

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Target: scaffold0728 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 1944 - 1837
Alignment:
Q  1 ccgtgattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggttga-gggtctgcagagtgaacacccaactaattacgaacaagc 99  Q
    |||||||||||||||||  || || ||||||||||||||| | ||||| ||||||||| | |||||||| || |||||||||||| ||   |||||||||    
T  1944 ccgtgattttgcaagacatgaggaagtaccaaactgaagatagtggtcgacaatggttaaggggtctgctgaatgaacacccaaccaacgccgaacaagc 1845  T
Q  100 taccaaac 107  Q
    | ||||||    
T  1844 tgccaaac 1837  T

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Target: scaffold0728; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 6884 - 6777
Alignment:
Q  1 ccgtgattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggttga-gggtctgcagagtgaacacccaactaattacgaacaagc 99  Q
    |||||||||||||||||  || || ||||||||||||||| | ||||| ||||||||| | |||||||| || |||||||||||| ||   |||||||||    
T  6884 ccgtgattttgcaagacatgaggaagtaccaaactgaagatagtggtcgacaatggttaaggggtctgctgaatgaacacccaaccaacgccgaacaagc 6785  T
Q  100 taccaaac 107  Q
    | ||||||    
T  6784 tgccaaac 6777  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 32794191 - 32794112
Alignment:
Q  5 gattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggttga-gggtctgcagagtgaacacccaac 84  Q
    |||||||||||||| ||||| |||||||| || | |||||||| |||||||||| | |||||||| || ||||||||||||    
T  32794191 gattttgcaagacctgaaga-gtaccaaattggataaaatggttaacaatggttaaggggtctgctgaatgaacacccaac 32794112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 1073395 - 1073451
Alignment:
Q  4 tgattttgcaagaccggaagaggtaccaaactgaagaaaatggtcaacaatggttga 60  Q
    ||||||||||||||| || || |||||||||| ||||||||| || ||||| |||||    
T  1073395 tgattttgcaagacctgaggaagtaccaaactaaagaaaatgatccacaattgttga 1073451  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 38540186 - 38540150
Alignment:
Q  4 tgattttgcaagaccggaagaggtaccaaactgaaga 40  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  38540186 tgattttgcaagacctgaagaagtaccaaactgaaga 38540150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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