View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17604_low_1 (Length: 922)
Name: NF17604_low_1
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 767; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 33 - 908
Target Start/End: Original strand, 1481002 - 1481865
Alignment:
| Q |
33 |
ctttgattgaacattaccttcctctagctgaaatctgaatttgcaagacctatttcatcggggaatagagggctgagaccaacaaaaaattcttacacta |
132 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481002 |
ctttgattgaacatcactttcctctagctgaaatctgaatttgcaagacctatttcatcagggaatagagggctgagaccaacaaaaaattcttacacta |
1481101 |
T |
|
| Q |
133 |
ttcaagacatagaactgaagaagattcttgtgttttcatgtgactgcaactttataagacatgttggaccaactgagaatgttattttggtacacgataa |
232 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1481102 |
ttcaagacatagagctgaagaagattcttgtgttttcatgtgactgcaactttataagacatgttggaccaactgagaatgttattttggtacatgataa |
1481201 |
T |
|
| Q |
233 |
agaagtaaacacgaaaagnnnnnnnnncaatgaaaatagaaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaact |
332 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481202 |
agaagtaaacacgaaaagaa--------aaagaaaa---aaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaact |
1481290 |
T |
|
| Q |
333 |
gtgtatgtttgtcctctatcagttgcatattcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccatt |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481291 |
gtgtatgtttgtcctctatcagttgcatattcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccatt |
1481390 |
T |
|
| Q |
433 |
gcttccaagacatgataggaacgatgatgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctct |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481391 |
gcttccaagacatgataggaacgatgatgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctct |
1481490 |
T |
|
| Q |
533 |
acatgttggttgtggatccaagtcttgcctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctgga |
632 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
1481491 |
acatgttggttgtggatccaagtcttgcctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaatgaagaagccgga |
1481590 |
T |
|
| Q |
633 |
aatgactgaagttgagtacctgttggaatcatccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaa |
732 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
1481591 |
aatgactgaagttgagtacctgttggaatcatccctaccaaatgattgaaagagaggttcaaataagaaagaaatgacatgcatacaatctgcacaggaa |
1481690 |
T |
|
| Q |
733 |
ttttaccgaacaaagagtaatttgagaggtctaaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaa |
832 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481691 |
ttttaccgaacaaagagttatttgagaggtctaaggactc-taactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaa |
1481789 |
T |
|
| Q |
833 |
agttgagaacatggagtgctttcagttccattagatcctctggtatcaatccttcaaagtgattggatgagaaatc |
908 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481790 |
agttgagaacatggagtgctttcagatccattagatcctctggtatcaatccttcaaagtgattggatgagaaatc |
1481865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 261 - 905
Target Start/End: Original strand, 5556991 - 5557637
Alignment:
| Q |
261 |
aatgaaaatagaaaacattatcttactaattattacaatgactagcactaatg---gtatcgccaccttaaaactgtgtatgtttgtcctctatcagttg |
357 |
Q |
| |
|
|||| |||| |||||||| || ||| ||||||| ||||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
5556991 |
aatggaaattgaaaacatcattttaataattatcacaatccttagcactaatgtaagtatcacaaccttaaaactgtgtatgtttgtcctctatcagtaa |
5557090 |
T |
|
| Q |
358 |
catattcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgat |
457 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||| |||| || ||| || |
|
|
| T |
5557091 |
catattcaagatacatccttgaaaagatccagcaaagaattttgtccacaagtttcaaataatttaccctccattgcttccaaaacattatgggacaaat |
5557190 |
T |
|
| Q |
458 |
gatgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatccaagtct |
557 |
Q |
| |
|
|| ||||| | ||| || | |||||| | ||| ||||||| |||||||||||||| |||||||| |||| || ||||| ||||||||||| |||||| |
|
|
| T |
5557191 |
gactattccgaatccaaacacaaatcccagttctacacttataaaattccagtcaattgaacaagtaagccttccacatgctggttgtggatgcaagtca |
5557290 |
T |
|
| Q |
558 |
tgcctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttg |
657 |
Q |
| |
|
||||| ||||||||| || || | ||||||||||| |||||||| |||||||| |||||||| ||||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
5557291 |
tgccttttaccatctagtcttaccgtcaatggaggaccatatagtccatcattaccttcaaatgaagatgcttcaaatgactgaagttgggtacctgttg |
5557390 |
T |
|
| Q |
658 |
gaatcatccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttga |
757 |
Q |
| |
|
| |||||||| || ||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| ||||||| ||| | ||| |||| |||||| |
|
|
| T |
5557391 |
ggatcatcccaactaaatgattgaaggagaggttcaaataagaaaggaatgacatgcttgcaagttgcactggaatttcaccaaccaatgagttatttga |
5557490 |
T |
|
| Q |
758 |
gaggtctaaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgctttcag |
857 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
5557491 |
gaggtccaaggactc-caactgtttcaggttcccaatagttgatgggatttcaccagagagagcattgtttgaaaagttgagaacatggattgctttgaa |
5557589 |
T |
|
| Q |
858 |
ttccattagatcctctggtatcaatccttcaaagtgattggatgagaa |
905 |
Q |
| |
|
|||||||| | |||||||| ||||||||| |||||||||||||| |
|
|
| T |
5557590 |
gtccattagcacatctggtattggtccttcaaaatgattggatgagaa |
5557637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 261 - 908
Target Start/End: Original strand, 5611595 - 5612241
Alignment:
| Q |
261 |
aatgaaaatagaaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgcat |
360 |
Q |
| |
|
|||| |||| ||||||||||| | | ||||||| ||||| ||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||| ||| |
|
|
| T |
5611595 |
aatggaaattgaaaacattatttaaataattatcacaatctctagcactaatcttatgaccaccttaaaattgtgtatgtctgtcctctatcagttacat |
5611694 |
T |
|
| Q |
361 |
attcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatgat |
460 |
Q |
| |
|
|||||| || |||||| ||| ||| | || ||||||||||| || | || |||||| ||||| ||||||| ||||||| ||| | |||| ||||||| |
|
|
| T |
5611695 |
attcaaaatgcatcctccgaaaaatcaaacagagaattttgtctacgagtttccaataacttactctccatttcttccaaaacaaaagaggaccgatgat |
5611794 |
T |
|
| Q |
461 |
gattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatccaagtctt-- |
558 |
Q |
| |
|
|||||| || || |||| |||||| || |||||||||| |||||||||||||| |||| ||| | | ||| ||| ||||| | || || | |
|
|
| T |
5611795 |
gattccgagcccaaaaacaaatcccaactccacacttaaaaaattccagtcaattgaagaagaggggaccg---atgctggctgtgggtgcagctcatcc |
5611891 |
T |
|
| Q |
559 |
-gcctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttg |
657 |
Q |
| |
|
|||| ||||||| |||| |||||||||| ||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5611892 |
tgccttttaccatttggtgtttcagtcaacggaggtccatatagcccattattcccttcaaatgaagaagcctgaaatgactgaagttgagtacctgttg |
5611991 |
T |
|
| Q |
658 |
gaatcatccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttga |
757 |
Q |
| |
|
| ||| |||| |||||||||||||| || || |||||||||||||| |||||||||||||||| |||| |||||||| ||| | ||| |||| ||||| |
|
|
| T |
5611992 |
ggatcttcccaaccaaatgattgaaggaaagtttcaaataagaaaggaatgacatgcttgcaagttgcagaggaatttcaccaaccaaggagttgtttga |
5612091 |
T |
|
| Q |
758 |
gaggtctaaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgctttcag |
857 |
Q |
| |
|
|| ||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
5612092 |
gaagtccaaggactc-taactgtttcaggttcccaatagttgatgggatttcacaagagaaagcattgtttgaaaagttgagaacatggattgctttgaa |
5612190 |
T |
|
| Q |
858 |
ttccattagatcctctggtatcaatccttcaaagtgattggatgagaaatc |
908 |
Q |
| |
|
|| ||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5612191 |
tttcatcagcccctctggtattggtccttcaaagtgattggatgagaaatc |
5612241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 261 - 908
Target Start/End: Original strand, 5551226 - 5551875
Alignment:
| Q |
261 |
aatgaaaatagaaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgcat |
360 |
Q |
| |
|
|||| |||||||||||||||| | | ||||||| ||||| ||| || ||||| |||| |||||||||| | ||||||| |||| |||||||||||||| |
|
|
| T |
5551226 |
aatggaaatagaaaacattatgtcaataattatcacaatctctatcaataatgttatcaccaccttaaagttctgtatgtctgtcatctatcagttgcat |
5551325 |
T |
|
| Q |
361 |
attcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatgat |
460 |
Q |
| |
|
|||||| || ||||||| ||||||| || ||||||||||| | | || |||||| ||||| ||||||| ||||||| ||| || ||| |||||| |
|
|
| T |
5551326 |
attcaaaatacatcctttggaagatccgacagagaattttgtctgcgagtttccaatagcttactctccatttcttccaaaacaagaggggacagatgat |
5551425 |
T |
|
| Q |
461 |
gattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatccaagtctt-- |
558 |
Q |
| |
|
|||||| || || |||| |||||| || |||||||||| |||||||||||||| ||||||||||| || | ||| | ||| ||| | || || | |
|
|
| T |
5551426 |
gattccaagcccaaaaacaaatcccaactccacacttaaaaaattccagtcaattgaacaagctaacctttcacaagctggctgtaggggcagctcatcc |
5551525 |
T |
|
| Q |
559 |
-gcctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttg |
657 |
Q |
| |
|
|||| ||||||| | ||||||||| || | |||||||||||||||| | ||||||||||| ||||| ||| ||||||||||||||||||||||||| | |
|
|
| T |
5551526 |
tgcctgttaccatttagtttttcaggcagtagaggtccatatagccccttgtttccttcaaatgaagacgcttgaaatgactgaagttgagtacctgtag |
5551625 |
T |
|
| Q |
658 |
gaatcatccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttga |
757 |
Q |
| |
|
| ||| | || |||||||||||||| || || |||||||||||||| ||||| | |||||||| |||||||| ||| ||| | ||| |||| |||||| |
|
|
| T |
5551626 |
ggatctttccaaccaaatgattgaaggaaaggttcaaataagaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttga |
5551725 |
T |
|
| Q |
758 |
gaggtctaaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgctttcag |
857 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||| | |
|
|
| T |
5551726 |
gaggtctaatgactc-taactgtttcaggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaa |
5551824 |
T |
|
| Q |
858 |
ttccattagatcctctggtatcaatccttcaaagtgattggatgagaaatc |
908 |
Q |
| |
|
|||||| ||| ||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
5551825 |
ttccatcagaacctgtggtattggtccttcaaaatgattggatgagaaatc |
5551875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 261 - 854
Target Start/End: Original strand, 5562779 - 5563371
Alignment:
| Q |
261 |
aatgaaaatagaaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgcat |
360 |
Q |
| |
|
|||| |||||||||||||||| | | ||||||| ||||| ||||||||||| |||| ||||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
5562779 |
aatggaaatagaaaacattatttcaataattatcacaattcttagcactaatgttatcaccaccttaaaattctgtatgtctgtcctctatcagttgcat |
5562878 |
T |
|
| Q |
361 |
attcaagattcatcct-tgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatga |
459 |
Q |
| |
|
|||||| || |||||| || ||| ||| | || ||||||||||| || | || |||||| ||||| ||||||| ||||||| ||| || ||| | | || |
|
|
| T |
5562879 |
attcaaaatgcatcctctggaaa-atcaaacagagaattttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacga |
5562977 |
T |
|
| Q |
460 |
tgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctct-acatgttggttgtggatccaagtctt |
558 |
Q |
| |
|
||||||| || || |||| |||||| ||||||||||||| |||||||||||||| ||||||||| | | ||| ||||| ||||||||| | | | ||| |
|
|
| T |
5562978 |
tgattccgagcccaaaaacaaatcccaattccacacttaaaaaattccagtcaattgaacaagcgaatc-tctcacatgctggttgtgggtgc--ggctt |
5563074 |
T |
|
| Q |
559 |
gcct--cttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgtt |
656 |
Q |
| |
|
|| | | ||| |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||| ||||||||| |
|
|
| T |
5563075 |
atctggcccatcatttggtgtttcagttaatggaggtccatatagcccatcatttccttcaaaggaagatgcttcaaatgattgaagttgggtacctgtt |
5563174 |
T |
|
| Q |
657 |
ggaatcatccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttg |
756 |
Q |
| |
|
|| ||| |||| ||||||||||||| || || ||||| ||||||| ||||||| ||||||||||||||||||||| ||||| | || ||||| ||||| |
|
|
| T |
5563175 |
gggatcttccccaccaaatgattgatggaaaggttcaagaaagaaaggaatgacaggcttgcaatctgcacaggaatcttaccaaccagagagttatttg |
5563274 |
T |
|
| Q |
757 |
agaggtctaaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgcttt |
854 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
5563275 |
agaggtccaaggactc-caactgtttcaggttcccgatagttgatggaatttcaccagagagagcattgtttgaaaagttgagaacataaagtgcttt |
5563371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 261 - 854
Target Start/End: Original strand, 5603475 - 5604069
Alignment:
| Q |
261 |
aatgaaaatagaaaacattatcttactaattattacaatgactagc--actaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgc |
358 |
Q |
| |
|
|||| ||| |||||||||| | |||| |||||| ||||||||| || ||||||| |||| ||||||||||||| |||||||||| ||||| || ||| | |
|
|
| T |
5603475 |
aatgtaaacagaaaacattgttttacaaattatcacaatgacttgcgcactaatgttatcaccaccttaaaactatgtatgtttgacctctgtcggttac |
5603574 |
T |
|
| Q |
359 |
atattcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatg |
458 |
Q |
| |
|
|||||| | || ||||||||| || |||||||||||| |||||||||||| || ||||||| |||||||||| ||||||||| ||||||| ||| ||| |
|
|
| T |
5603575 |
atattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatactttaccctccaatgcttccaaaacatgatgggataaatg |
5603674 |
T |
|
| Q |
459 |
atgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatccaagtctt |
558 |
Q |
| |
|
| ||||| || || ||||| ||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||| | ||||||| || || | |
|
|
| T |
5603675 |
acaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagctagccttctacatgcaagctgtggatgcatctcct |
5603774 |
T |
|
| Q |
559 |
gcctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttgg |
658 |
Q |
| |
|
|||| ||| ||| |||||||| |||| | ||||| |||||||||||||| ||||||||||| || || || |||||||||| ||| || ||||||| |
|
|
| T |
5603775 |
gccttttatcatttggttttttagtccaaggaggaccatatagcccatcgtttccttcaaatgatgattcttcgaatgactgaatttgggtgcctgttga |
5603874 |
T |
|
| Q |
659 |
aatcatccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttgag |
758 |
Q |
| |
|
||| || | ||||| ||||| | ||||| ||||| ||||||| ||||||| |||||||||||||||||||||| ||| | || | ||| ||||||| |
|
|
| T |
5603875 |
gatcttcaccgccaaacgattggaggagaggttcaaggaagaaaggaatgacaggcttgcaatctgcacaggaattccaccaaccagaaagttatttgag |
5603974 |
T |
|
| Q |
759 |
aggtctaaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgcttt |
854 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||| ||| |||||||||||||| ||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
5603975 |
aggtccaaagactc-caactgtttcaggttcccaacagttgatgggatttcaccatagagaccattgtttgaaaagttgagaacataaagtgcttt |
5604069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 266 - 908
Target Start/End: Complemental strand, 5888402 - 5887770
Alignment:
| Q |
266 |
aaatagaaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgcatattca |
365 |
Q |
| |
|
||||| |||||||||| ||| || |||| ||||| |||||| |||| |||| ||||||||||| | ||||||| ||||||||||||||| |||||||| |
|
|
| T |
5888402 |
aaatacaaaacattattttaatagttatcacaatccctagcattaattctatcaccaccttaaaattctgtatgtctgtcctctatcagttacatattca |
5888303 |
T |
|
| Q |
366 |
agattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatgatgattc |
465 |
Q |
| |
|
| || |||||| || ||| | || ||||||||||| || | || |||||| ||||| ||||||| ||||||| ||| || ||| | | |||||||| |
|
|
| T |
5888302 |
aaatgcatcctccggaaaatcaaacatagaattttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattc |
5888203 |
T |
|
| Q |
466 |
ctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctct-acatgttggttgtggatccaagtcttgcctct |
564 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||||| ||||||||| |||| ||||||||| | || ||| ||||| ||||||||| | || | |
|
|
| T |
5888202 |
caagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacc-tctcacatgctggttgtgggt---------gcggcc |
5888113 |
T |
|
| Q |
565 |
taccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttggaatcat |
664 |
Q |
| |
|
| ||| |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||| ||||||||||||||| ||||||||||| ||| | |
|
|
| T |
5888112 |
catcatttggtgtttcagttaatggaggtccatataggccatcattaccttcaaacgaagatgcttcaaatgactgaagttgggtacctgttgggatctt |
5888013 |
T |
|
| Q |
665 |
ccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttgagaggtct |
764 |
Q |
| |
|
||| |||||||||||||| || || ||||||||| |||| |||||||||||||||| |||| |||||||| ||| | ||| |||| ||||||||||| |
|
|
| T |
5888012 |
cccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttcaccaaccaaggagttgtttgagaggtcc |
5887913 |
T |
|
| Q |
765 |
aaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgctttcagttccatt |
864 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||||||||||||| || ||| |||||||||||||||||| |||| |||||||||| | || |||| |
|
|
| T |
5887912 |
aaggactc-taactgtttcaggtttgcaatagttaatgggatttcaccagaaaaatcattgtttgaaaagttgaaaacaaggagtgctttaaatttcatt |
5887814 |
T |
|
| Q |
865 |
agatcctctggtatcaatccttcaaagtgattggatgagaaatc |
908 |
Q |
| |
|
|| | |||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
5887813 |
agcacgtctggtatttgtccttcaaaatgattggatgagaaatc |
5887770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 272 - 854
Target Start/End: Complemental strand, 5855160 - 5854577
Alignment:
| Q |
272 |
aaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgcatattcaagattc |
371 |
Q |
| |
|
|||||||||| ||| || |||| ||||| |||||||| ||| |||| | |||||||| | ||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
5855160 |
aaaacattattttaatagttatcacaatccctagcactgatgttatcacacccttaaaattctgtatgtctgtcctctatcagttgcatattcaaaatac |
5855061 |
T |
|
| Q |
372 |
atccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatgatgattcctagtc |
471 |
Q |
| |
|
|||||| |||||||| || | |||||| || || || |||||| | ||| |||||| |||||||| ||| | | ||| | ||||||||||| || | |
|
|
| T |
5855060 |
atccttcggaagatccaacagataatttt-tctacgcgtttccaataacatactctccatcgcttccaaaacaaggtgggaccaatgatgattccgagcc |
5854962 |
T |
|
| Q |
472 |
cgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatccaagtctt---gcctcttacc |
568 |
Q |
| |
|
| |||| |||||| || |||| ||| | |||||||||||||| ||||||||||| || | ||| | ||||| | | || || | |||| ||||| |
|
|
| T |
5854961 |
caaaaacaaatcccaactccatactcaaaaaattccagtcaattgaacaagctaacctttcacaggctggttcttggggcagctcatcctgccttttacc |
5854862 |
T |
|
| Q |
569 |
atctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttggaatcatccct |
668 |
Q |
| |
|
|| ||||||||||| || |||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||| ||||| || ||| | || |
|
|
| T |
5854861 |
atttggtttttcaggcagtggaggtccatatagcccattgtttccttcaaacgaagtcgcttgaaatgactgaagttgagttcctgtcgggatctttcca |
5854762 |
T |
|
| Q |
669 |
accaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttgagaggtctaagg |
768 |
Q |
| |
|
||||||| |||||| || || ||||||||||| || || ||| |||||| | |||||||| ||| ||| | ||| |||| ||||||||||||||| | |
|
|
| T |
5854761 |
accaaataattgaaggaaaggttcaaataagagaggaacaacaagcttgccagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatg |
5854662 |
T |
|
| Q |
769 |
actcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgcttt |
854 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5854661 |
actc-taactgtttcaggttcccgatagttgatgggatttcaccagagaaagcattgtttgaaaagttgagaacatggactgcttt |
5854577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 471 - 908
Target Start/End: Original strand, 3747186 - 3747622
Alignment:
| Q |
471 |
ccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatccaagtcttgcctcttaccat |
570 |
Q |
| |
|
||||||| |||||| ||||||||||||| || |||||||||| ||| |||||||| || ||||||| |||||||| |||||| ||||| |||||| |
|
|
| T |
3747186 |
ccgaaaacaaatccaaattccacacttaaaatattccagtcacttgacttagctagccttccacatgtttcttgtggatgcaagtcctgccttataccat |
3747285 |
T |
|
| Q |
571 |
ctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttggaatcatccctac |
670 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||| ||||||||| || ||||| ||| ||||||||||||||| ||||||||||||||| |||| || |
|
|
| T |
3747286 |
ctggtttttcagtcaacggaggaccatatagaccataatttccttcgaacgaagatgcttcaaatgactgaagttgcgtacctgttggaatcttcccaac |
3747385 |
T |
|
| Q |
671 |
caaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttgagaggtctaaggac |
770 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| || |||| ||| |||| |||| ||||||| ||| | ||| |||| |||||||||||| |||||| |
|
|
| T |
3747386 |
caaatgattgaaggagaggttcaaatatgaaaggaaggacaagctggcaagttgcatgggaatttcaccaaccaatgagttatttgagaggtccaaggac |
3747485 |
T |
|
| Q |
771 |
tcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgctttcagttccattagatcc |
870 |
Q |
| |
|
|| ||||||||||| ||| || ||||| ||||| |||||||| |||| | ||||||||||||||||||||||||| |||||| | || |||||| || |
|
|
| T |
3747486 |
tc-taactgtttcaagtttcctatagttgatggaatttcaccagagagattgttgtttgaaaagttgagaacatggattgctttgaatttcattagcacc |
3747584 |
T |
|
| Q |
871 |
tctggtatcaatccttcaaagtgattggatgagaaatc |
908 |
Q |
| |
|
| || || ||||||||| ||||| ||||||||||| |
|
|
| T |
3747585 |
ttcgggattggtccttcaaaatgattcgatgagaaatc |
3747622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 261 - 908
Target Start/End: Complemental strand, 5850196 - 5849548
Alignment:
| Q |
261 |
aatgaaaatagaaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgcat |
360 |
Q |
| |
|
|||||||||||||||||| ||| || |||| ||||| ||||||||||| |||| ||||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
5850196 |
aatgaaaatagaaaacatcgatttaatatttatcacaatccgtagcactaatgctatcaccaccttaaaattctgtatgtctgtcctctatcagttgcat |
5850097 |
T |
|
| Q |
361 |
attcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatgat |
460 |
Q |
| |
|
|||||| || ||| ||| |||||||| || ||||||||||| || | || |||||| ||||| ||||||| ||||||| ||| || ||| |||||| |
|
|
| T |
5850096 |
attcaaaatacattcttcggaagatccaacatagaattttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggagtgatgat |
5849997 |
T |
|
| Q |
461 |
gattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatccaagtcttgc |
560 |
Q |
| |
|
||||| || || |||| |||||| || |||||||||| |||||||||||||| |||||| ||| | | ||||||||| | || | || | | | |
|
|
| T |
5849996 |
aattccgagcccaaaaacaaatcccaactccacacttaaaaaattccagtcaatcgaacaatctaacttttcacatgttggctctgagtgcagcttatcc |
5849897 |
T |
|
| Q |
561 |
---ctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttg |
657 |
Q |
| |
|
| ||||||| | || || || ||| || ||| |||||||| |||||||| |||||||| || || ||| ||||||||||||||| |||||||||| |
|
|
| T |
5849896 |
ggacctttaccatatagtgttacattcagtgaaggaccatatagtccatcattaccttcaaacgacgatgcttcaaatgactgaagttgggtacctgttg |
5849797 |
T |
|
| Q |
658 |
gaatcatccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttga |
757 |
Q |
| |
|
| ||| |||| |||||||||||||| || || |||||||||||||| || ||| | |||||| ||||||||||| || ||| | |||||||| |||||| |
|
|
| T |
5849796 |
ggatcttccccaccaaatgattgaaggataggttcaaataagaaaggaagaacaagtttgcaaactgcacaggaa-ttcaccaaccaaagagttatttga |
5849698 |
T |
|
| Q |
758 |
gaggtctaaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgctttcag |
857 |
Q |
| |
|
|||||| |||||||| || |||||||| ||| ||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||| ||| || | |
|
|
| T |
5849697 |
gaggtccaaggactc-tagctgtttcaagttttcaatagttgatgggatttcaccagaaaaaacattgtttgaaaagttgagaacatggattgccttaaa |
5849599 |
T |
|
| Q |
858 |
ttccattagatcctctggtatcaatccttcaaagtgattggatgagaaatc |
908 |
Q |
| |
|
|| |||||| ||||||||| |||||| || ||||||||||||||||| |
|
|
| T |
5849598 |
tttcattagcaactctggtattggtccttcgaaatgattggatgagaaatc |
5849548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 266 - 863
Target Start/End: Complemental strand, 5897265 - 5896666
Alignment:
| Q |
266 |
aaatagaaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgcatattca |
365 |
Q |
| |
|
||||| |||||||||| ||| || |||| ||||| |||||| |||| |||| ||||||||||| | ||||||| ||||||||||||||| |||||||| |
|
|
| T |
5897265 |
aaatacaaaacattattttaatagttatcacaatccctagcattaattctatcaccaccttaaaattctgtatgtctgtcctctatcagttacatattca |
5897166 |
T |
|
| Q |
366 |
agattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatgatgattc |
465 |
Q |
| |
|
| || |||||| || ||| | || ||||||||||| || | || |||||| ||||| ||||||| ||||||| ||| || ||| | | |||||||| |
|
|
| T |
5897165 |
aaatgcatcctccggaaaatcaaacatagaattttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattc |
5897066 |
T |
|
| Q |
466 |
ctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctct-acatgttggttgtggatccaagtctt---gcc |
561 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||||| |||||||| |||| ||||||||| | || ||| ||||| ||||||||| | || || | || |
|
|
| T |
5897065 |
caagtccaaaaataaatcccaattccacacttaaaaaattccgttcaattgaacaagcaaacc-tctcacatgctggttgtgggtgcagttcatcctgct |
5896967 |
T |
|
| Q |
562 |
tcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttggaat |
661 |
Q |
| |
|
| |||| | | || || || ||| ||||| |||||||| |||||||| ||| ||| ||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
5896966 |
ttttacagtatagtgttgcattcagcggaggaccatatagtccatcattacctctaaacgaagatgcttcaaatgactgaagttgggtacctgttggaat |
5896867 |
T |
|
| Q |
662 |
catccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttgagagg |
761 |
Q |
| |
|
| |||| ||||||||||||| || || |||||||||||||| ||||||| ||||||| ||||| ||||||| ||| | |||||||| |||||||||| |
|
|
| T |
5896866 |
cttccccaccaaatgattgagggataggttcaaataagaaaggaatgacaaacttgcaagttgcaccggaatttcaccaaccaaagagttatttgagagg |
5896767 |
T |
|
| Q |
762 |
tctaaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgctttcagttcc |
861 |
Q |
| |
|
|| |||||||| || ||||||||||| ||||||| ||||| |||||||| ||||| ||||||| ||||||||||||| ||||| |||||| | |||| |
|
|
| T |
5896766 |
tccaaggactc-tagttgtttcaggtttgcaatagttgatggaatttcaccatagaaaccattgttcgaaaagttgagaaaatggattgctttgaattcc |
5896668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 320 - 854
Target Start/End: Original strand, 5856183 - 5856722
Alignment:
| Q |
320 |
ccaccttaaaactgtgtatgtttgtcctctatcagttgcatattcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaatac |
419 |
Q |
| |
|
|||||||||||||||||| |||||||||| | || ||||||||| || ||||| | || |||||||||||||||||||||| | || |||||| |
|
|
| T |
5856183 |
ccaccttaaaactgtgtaagtttgtcctccttgttttacatattcaaaatgcatccaagggaatatccagcaaagaattttgtccatgagtttccaataa |
5856282 |
T |
|
| Q |
420 |
cttaccctccattgcttccaagacatgataggaacgatgatgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaac |
519 |
Q |
| |
|
| ||||||||||||||||||| ||||||| ||| | || | |||| || || ||||||||||||| ||||||||||| ||||||||| |||| | ||| |
|
|
| T |
5856283 |
cctaccctccattgcttccaaaacatgatgggaccaataacacttccaagcccaaaaataaatcctagttccacacttaaaaaattccaatcaattaaac |
5856382 |
T |
|
| Q |
520 |
aagctagc------cctctacatgttggttgtggatccaagtcttgcctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttcc |
613 |
Q |
| |
|
||| || | | |||||||| ||| ||||||| ||| || ||| | ||| ||| || |||| |||||| |||||||||||| || || ||||| |
|
|
| T |
5856383 |
aagataactttctacttctacatgctggctgtggatgcaattcctgctttttatcatatgcttttctagtcaacagaggtccatataatccgtcgtttcc |
5856482 |
T |
|
| Q |
614 |
ttcaaaagaagaagctggaaatgactgaagttgagtacctgttggaatcatccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatg |
713 |
Q |
| |
|
|| ||| |||||| | |||||||||||||||||| |||||||||||| |||| | ||||||||||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
5856483 |
tttaaaggaagaatcgtcaaatgactgaagttgagtgcctgttggaatcttccccgcgaaatgattgaatgagaggttcaagtaagaaaggaatgacaga |
5856582 |
T |
|
| Q |
714 |
cttgcaatctgcacaggaattttaccgaacaaagagtaatttgagaggtctaaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccg |
813 |
Q |
| |
|
||||||| |||| ||||||| ||| | |||||||| ||||||||||||||| ||||| |||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
5856583 |
cttgcaagttgcatgggaatttcaccaatcaaagagttatttgagaggtctaatgactc-caactgtttcaagtttccaatagaagatgggatttcacct |
5856681 |
T |
|
| Q |
814 |
gagaaagcattgtttgaaaagttgagaacatggagtgcttt |
854 |
Q |
| |
|
|||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
5856682 |
gagagacaattgtttgaaaagttgagaacatgaagtgcttt |
5856722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 564 - 841
Target Start/End: Complemental strand, 5573048 - 5572772
Alignment:
| Q |
564 |
ttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttggaatca |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
5573048 |
ttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaatgactgaagttgagtacctgttgggatct |
5572949 |
T |
|
| Q |
664 |
tccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttgagaggtc |
763 |
Q |
| |
|
|||| |||||||||||||| || || |||||||| ||||| || |||| |||| | | |||||||||||||| ||| ||||| || |||||||||||| |
|
|
| T |
5572948 |
tccccaccaaatgattgaaggaaaggttcaaatatgaaaggaaggacaagctttctagctgcacaggaatttcaccagtcaaagtgttatttgagaggtc |
5572849 |
T |
|
| Q |
764 |
taaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaa |
841 |
Q |
| |
|
||||||||| || ||||||| |||||| || | |||||||||| ||| |||| | |||||||||| |||||||| |
|
|
| T |
5572848 |
taaggactc-caattgtttcaagttccctatggaagatgggattttacctgagagacggttgtttgaaatgttgagaa |
5572772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 564 - 841
Target Start/End: Complemental strand, 5585255 - 5584979
Alignment:
| Q |
564 |
ttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttggaatca |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
5585255 |
ttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaatgactgaagttgagtacctgttgggatct |
5585156 |
T |
|
| Q |
664 |
tccctaccaaatgattgaaagagagattcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttgagaggtc |
763 |
Q |
| |
|
|||| |||||||||||||| || || |||||||| ||||| || |||| |||| | | |||||||||||||| ||| ||||| || |||||||||||| |
|
|
| T |
5585155 |
tccccaccaaatgattgaaggaaaggttcaaatatgaaaggaaggacaagctttctagctgcacaggaatttcaccagtcaaagtgttatttgagaggtc |
5585056 |
T |
|
| Q |
764 |
taaggactcttaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaa |
841 |
Q |
| |
|
||||||||| || ||||||| |||||| || | |||||||||| ||| |||| | |||||||||| |||||||| |
|
|
| T |
5585055 |
taaggactc-caattgtttcaagttccctatggaagatgggattttacctgagagacggttgtttgaaatgttgagaa |
5584979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 690 - 908
Target Start/End: Complemental strand, 5891047 - 5890830
Alignment:
| Q |
690 |
ttcaaataagaaagaaatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttgagaggtctaaggactcttaactgtttcaggttc |
789 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||| ||| | |||||||| |||||||||||| ||||||||| | ||||| ||| | |
|
|
| T |
5891047 |
ttcaaataagaaaggaatgacatgcttgcaagctgcacaggaatttcaccaaccaaagagttatttgagaggtccaaggactct-atctgttctaggctt |
5890949 |
T |
|
| Q |
790 |
ccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgctttcagttccattagatcctctggtatcaatccttcaa |
889 |
Q |
| |
|
||||||| || ||||||||||| || ||||||||||||||||||||||||||||||| |||||| | || |||||| |||||||||| |||||||| |
|
|
| T |
5890948 |
gcaatagtggaggggatttcaccagaaaaagcattgtttgaaaagttgagaacatggactgctttaaatttcattaggacctctggtattggtccttcaa |
5890849 |
T |
|
| Q |
890 |
agtgattggatgagaaatc |
908 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
5890848 |
aataattggatgagaaatc |
5890830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 319 - 511
Target Start/End: Complemental strand, 5573272 - 5573080
Alignment:
| Q |
319 |
gccaccttaaaactgtgtatgtttgtcctctatcagttgcatattcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaata |
418 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||||| | || |||||| |
|
|
| T |
5573272 |
gccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaata |
5573173 |
T |
|
| Q |
419 |
ccttaccctccattgcttccaagacatgataggaacgatgatgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtc |
511 |
Q |
| |
|
|||| |||||||||||||||| |||| | |||| | |||| ||||| || || |||| ||| || ||||| ||||||| ||| |||||||| |
|
|
| T |
5573172 |
tcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttccagtc |
5573080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 319 - 511
Target Start/End: Complemental strand, 5585479 - 5585287
Alignment:
| Q |
319 |
gccaccttaaaactgtgtatgtttgtcctctatcagttgcatattcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaata |
418 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||||| | || |||||| |
|
|
| T |
5585479 |
gccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaata |
5585380 |
T |
|
| Q |
419 |
ccttaccctccattgcttccaagacatgataggaacgatgatgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtc |
511 |
Q |
| |
|
|||| |||||||||||||||| |||| | |||| | |||| ||||| || || |||| ||| || ||||| ||||||| ||| |||||||| |
|
|
| T |
5585379 |
tcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttccagtc |
5585287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 609 - 840
Target Start/End: Complemental strand, 253590 - 253359
Alignment:
| Q |
609 |
tttccttcaaaagaagaagctggaaatgactgaagttgagtacctgttggaatcatccctaccaaatgattgaaagagagattc----aaataagaaaga |
704 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||||||||||||||||| |||||| ||| |||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
253590 |
tttccttcaagggaagaagcttgaaatg-ctgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaaga |
253492 |
T |
|
| Q |
705 |
aatgacatgcttgcaatctgcacaggaattttaccgaacaaagagtaatttgagaggtctaaggactcttaactgtttcaggttcccaatagtcgatggg |
804 |
Q |
| |
|
| |||| |||| ||| | |||||||||||| | | ||||||| ||||||||||||||||||||| ||| ||||||| |||||| |||| || ||| |
|
|
| T |
253491 |
agggacaagcttccaagtttcacaggaattttgctaactaaagagttatttgagaggtctaaggactc-taattgtttcaagttccctatagaagacggg |
253393 |
T |
|
| Q |
805 |
atttcaccggagaaagcattgtttgaaaagttgaga |
840 |
Q |
| |
|
||||| || ||| | |||||||||||||||||||| |
|
|
| T |
253392 |
atttcgcctgag--accattgtttgaaaagttgaga |
253359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 261 - 625
Target Start/End: Complemental strand, 5891417 - 5891051
Alignment:
| Q |
261 |
aatgaaaatagaaaacattatcttactaattattacaatgactagcactaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgcat |
360 |
Q |
| |
|
|||||||||||||||||| ||| || |||| ||||| ||||||||||| |||| ||||||||||| | ||||||| | |||||||||| || ||| |
|
|
| T |
5891417 |
aatgaaaatagaaaacatcgatttaatatttatcacaatccttagcactaatgctatcaccaccttaaaattttgtatgtctttcctctatcaattacat |
5891318 |
T |
|
| Q |
361 |
attcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatgat |
460 |
Q |
| |
|
|||||| || |||||| || ||| | || ||||| ||||| || | || |||||| ||||| ||||||| ||||||| ||| || ||| | ||||| |
|
|
| T |
5891317 |
attcaaaatgcatcctccggaaaatcaaacagagaatcttgtctacgagtttccaataacttactctccatttcttccaa-acaagaggggaccaatgat |
5891219 |
T |
|
| Q |
461 |
gattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatcca---agtct |
557 |
Q |
| |
|
|||||| | || |||| |||||| || |||||||||| ||||||||| |||| ||||||| ||| || | | ||| ||||| ||| | || ||| |
|
|
| T |
5891218 |
gattccgaacccaaaaacaaatcccaactccacacttaaaaaattccaatcaattgaacaacctaacctttcatatgctggttatgggtgcagttcatct |
5891119 |
T |
|
| Q |
558 |
tgcctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaaga |
625 |
Q |
| |
|
||||| ||||||| | || || || ||| |||||| |||||||| |||||||| |||||||| ||||| |
|
|
| T |
5891118 |
tgccttttaccatatagtgttacattcagtggaggaccatatagtccatcattaccttcaaacgaaga |
5891051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 799 - 854
Target Start/End: Original strand, 43277546 - 43277601
Alignment:
| Q |
799 |
gatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgcttt |
854 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
43277546 |
gatgggatttcacctgagaaatgattgtttgaaaagttgagaacatatagtgcttt |
43277601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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