View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_low_10 (Length: 371)
Name: NF17604_low_10
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 51105029 - 51105388
Alignment:
| Q |
7 |
ggtgtttctattggcctcatcccgctcgcatcaacaaacttttccttgaatctcatctcaagaaatcaaggtttctcttttgaggtnnnnnnnttccagt |
106 |
Q |
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| T |
51105029 |
ggtgtttctattggcctcatcccgctcgcatcaacaaacttgtctttgaatctcatctcaagaaatcaaggtttctcttttgaggtaaaaaaattccagt |
51105128 |
T |
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| Q |
107 |
cactcgaaaatgtgaagataagtgggacaccattagttgatgaggttgtgaagtttgatgctactttgatttccgcagtacaagaacaagaactaacaga |
206 |
Q |
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| T |
51105129 |
cactcgaaaatgtgaagataaatgatacaccattagttgatgaggttgtgaagtttgatgctactttgatttccgcagtacaagaacaagaactaacaga |
51105228 |
T |
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| Q |
207 |
cggtgtaacgtacaatatatcaggtatccaattcggcgatgaaccatattttgagtctctaaagcttcacattgttgtcacaccgacttaccatcgtcta |
306 |
Q |
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| T |
51105229 |
cggtgtaacgtataatatatcagacagccaattcggtgatgaatcatatttggagtctcaaaagcttttcataattgtcacaccgacttacaatcatcta |
51105328 |
T |
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| Q |
307 |
tatcatgcttattatttgcttcacttgtctccaactttgaaattggtctcccctcctttg |
366 |
Q |
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| T |
51105329 |
tatcaagcttattatttgcatcacttgtcacaaactttgaaattggtttcccctcctttg |
51105388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 13077209 - 13077160
Alignment:
| Q |
7 |
ggtgtttctattggcctcatcccgctcgcatcaacaaacttttccttgaa |
56 |
Q |
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| T |
13077209 |
ggtgtttctattggcctcatcccgcttgcatcaaccaacttgtccttgaa |
13077160 |
T |
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