View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17604_low_11 (Length: 364)
Name: NF17604_low_11
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 14084048 - 14083769
Alignment:
| Q |
20 |
gatctttgtggtccaccacttgtaaaattgtgtactccgggggagccgccacatgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatc |
119 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||| |||| |||| |||||||| |||||||| ||| |||||| | |||||||| |||||||||||| |
|
|
| T |
14084048 |
gatctttgtggaccaccacttgtaaaatcgtgtgctcaggggaagccaccacatgaaccaaaagttgaaattcaaggcgatgaagatctgcttctcaatc |
14083949 |
T |
|
| Q |
120 |
ctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaa |
219 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
14083948 |
gtggattttacatcagtctgatatttggatttattataggcttctggggagtatttggctcaatcctaatcaagcgcacttggagacatgcttatttcaa |
14083849 |
T |
|
| Q |
220 |
gttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
299 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
14083848 |
gttcatgaacaatttagcagataatatttacgtgaaatgcagaaggtggcttagaggctaactggtaataatactttaac |
14083769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 13931741 - 13931465
Alignment:
| Q |
20 |
gatctttgtggtccaccacttgtaaaattgtgtactccgggggagccgccacatgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
13931741 |
gatctttgtggtccaccacttgtaaaattgtgtactcagggggagccaccacatgatccaaaag---aagttcaagatgatgaagatttgcttctcaatc |
13931645 |
T |
|
| Q |
120 |
ctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaa |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13931644 |
gtggattttacatcagtctgacatttggatttattataggcttctggggcgtttttggttcaatcctaatcaagcgttcttggagacatgcttatttcaa |
13931545 |
T |
|
| Q |
220 |
gttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||| | ||||| | || ||||||||||||||| |||||| |
|
|
| T |
13931544 |
gttcatgaacaatttagtggataatatttacgtcaaatgcagatgatggctcaatgattaactggtaataatactttaac |
13931465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 13473675 - 13473954
Alignment:
| Q |
20 |
gatctttgtggtccaccacttgtaaaattgtgtactccgggggagccgccacatgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatc |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||| | || ||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
13473675 |
gatctttgtggaccaccacttgtaaaattgtgtgttgaagggaaaccaccatatgatccaaaagtagaagttcaaaacgatgaagatttgcttctcaatc |
13473774 |
T |
|
| Q |
120 |
ctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaa |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
13473775 |
gtggattttacatcagtctgacatttggatttattataggcttttggggtgtatttggatcaatcctaatcaagcgttcctggagacatgcttatttcaa |
13473874 |
T |
|
| Q |
220 |
gttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
299 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||| || |||||| ||| ||||||||||||||| |||||| |
|
|
| T |
13473875 |
gttcatgaacaatttaatggataaaatttacgtcaaatgcagatgggggcttaaagattaactggtaataatactttaac |
13473954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 13911240 - 13910990
Alignment:
| Q |
20 |
gatctttgtggtccaccacttgtaaaattgtgtactccgggggagccgccacatgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| | |||||| | |||| | | ||||| ||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
13911240 |
gatctttgtggtccaccacttgtaaaattgtgtgctcaagaggagccacaacataaactgaaagttgaaattcaggacgatgaagatttgcttctcaatc |
13911141 |
T |
|
| Q |
120 |
ctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
13911140 |
gtggattttacatcagtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcatggagacatgcttatttcag |
13911041 |
T |
|
| Q |
220 |
gttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggct |
270 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||| ||||||| |
|
|
| T |
13911040 |
attcatgaacaatttaggggatagtatttacatgaaatgcagatggtggct |
13910990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 14046782 - 14046553
Alignment:
| Q |
20 |
gatctttgtggtccaccacttgtaaaattgtgtactccgggggagccgccacatgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatc |
119 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||| | ||| | || |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14046782 |
gatctttgtggaccaccatttgtaaaattttgtgttaaagggaaaccaccacatgaaccaaaagtagaagttcaagacgatgaagatttgcttctcaatc |
14046683 |
T |
|
| Q |
120 |
ctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14046682 |
gtggattttacatcagtctgacattcggatttattataggcttctggggtgtctttggctcaatcctaatcaagcgttcttggagacatgcttatttcag |
14046583 |
T |
|
| Q |
220 |
gttcatgaacaatttagccgataatattta |
249 |
Q |
| |
|
||||||||||||||||| ||||||||||| |
|
|
| T |
14046582 |
gttcatgaacaatttagtggataatattta |
14046553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 13875987 - 13876258
Alignment:
| Q |
20 |
gatctttgtggtccaccacttgtaaaattgtgtactccgggggagccgccacatgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatc |
119 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||| |||||||| ||||| | | || |||||||| ||||||||||||||||||||| |
|
|
| T |
13875987 |
gatctttgtggaccaccacttgtaaacttgtgcgtcaaaggggagccaccacatgaaccaaatggaaaaattcaagacgatgaagatttgcttctcaatc |
13876086 |
T |
|
| Q |
120 |
ctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaa |
219 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
13876087 |
gtggattttacataagcctgacatttggatttattataggcttttggggagtatttggttcaatcctaatcaagcgttcttggcgacatgcttatttcaa |
13876186 |
T |
|
| Q |
220 |
gttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataat |
291 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||||||||| ||||||| | ||| ||| ||||||||| |
|
|
| T |
13876187 |
gttcttgaacaatttagtggatgatatttacgtgaaatgcagatggtggctcaaagattaataggtaataat |
13876258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 90 - 299
Target Start/End: Complemental strand, 14024589 - 14024380
Alignment:
| Q |
90 |
ttcaagacaatgaagatttgcttctcaatcctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaat |
189 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
14024589 |
ttcaagacgatgaagatttgcttcttaatcgtggattttacatcagtctgacattcggatttattataggcttttggggagtgtttggctcaatcctaat |
14024490 |
T |
|
| Q |
190 |
caagcgttcttggagacatgcgtatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaata |
289 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| | ||| |||| ||||||| |
|
|
| T |
14024489 |
caagcgttcctggagacatgcttatttcaagttcatgaacaacttagtggatgctatttacgtgaaatgcagatggtggctcaaagattaaccggtaata |
14024390 |
T |
|
| Q |
290 |
ataatttaac |
299 |
Q |
| |
|
||| |||||| |
|
|
| T |
14024389 |
atactttaac |
14024380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 14014528 - 14014249
Alignment:
| Q |
20 |
gatctttgtggtccaccacttgtaaaattgtgtactccgggggagccgccacatgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatc |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | || ||||| |||| || ||||||| || |||||||| ||||||||||||||| |||| |
|
|
| T |
14014528 |
gatctttgtggagcaccacttgtaaaattgtgcgttgatggagagccatcacaagaaccaaaagggaaaattcaagacgatgaagatttgcttcggaatc |
14014429 |
T |
|
| Q |
120 |
ctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaa |
219 |
Q |
| |
|
|||||||| || || |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
14014428 |
gaggattttatataagcctgacatttggatttattttaggcttttggggagtatttggttcaatcctaatcaagcgttcttggcgacatgcttatttcaa |
14014329 |
T |
|
| Q |
220 |
gttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
14014328 |
gttcatgaacaatttatgggataatatttacgtgaaatgcagaaggtagctcaaagactaactggtaataatactttaac |
14014249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 90 - 270
Target Start/End: Original strand, 13893761 - 13893941
Alignment:
| Q |
90 |
ttcaagacaatgaagatttgcttctcaatcctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaat |
189 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13893761 |
ttcaagacgatgaagatttgcttctcaatcgaggattttacataagcctgacatttggatttattataggcttttggggagtatttggttcaatcctaat |
13893860 |
T |
|
| Q |
190 |
caagcgttcttggagacatgcgtatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggct |
270 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
13893861 |
caagcgttcttggcgacatgcttatttcaagttcttgaacaatttagtggataatatttacgtcaaatgcagatggtggct |
13893941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 71 - 262
Target Start/End: Complemental strand, 14109803 - 14109612
Alignment:
| Q |
71 |
catgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatcctggattttacatcagtctgacattcggatttattataggcttctggggag |
170 |
Q |
| |
|
||||| ||||||| ||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14109803 |
catgaaccaaaagcagaagttcaagacgataaagatttgcttctcaatcgaggattttacataagtctgacattcggatttattataggcttttggggag |
14109704 |
T |
|
| Q |
171 |
tatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcaga |
262 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||| |
|
|
| T |
14109703 |
tgtttggctcaatcctaatcaagcgctcttggagacatgcttatttcaagttcatgaacaacttagtggatacaatttacgtgaaatgcaga |
14109612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 13863517 - 13863767
Alignment:
| Q |
20 |
gatctttgtggtccaccacttgtaaaattgtgtactccgggggagccgccacatgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatc |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | | | | || | ||||||||||||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
13863517 |
gatctttgtggcccaccacttgtaaaattgtgtgttaaagtgaaaccactgcatgatccaaaagtagaagttcaagacgatgacgaacggcttctcaatc |
13863616 |
T |
|
| Q |
120 |
ctggattttacatcagtctgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaa |
219 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
13863617 |
gtgggttttacatcagtctgacatttggatttattataggcttctggggtgtatttggctcaatcctaatcaagcgctcctggagacatgcttatttcaa |
13863716 |
T |
|
| Q |
220 |
gttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggct |
270 |
Q |
| |
|
|||| |||||||||||| ||| || |||||||||| |||||| ||||||| |
|
|
| T |
13863717 |
gttcttgaacaatttagtggatgatgtttacgtgaagtgcagatggtggct |
13863767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 71 - 299
Target Start/End: Complemental strand, 14022046 - 14021818
Alignment:
| Q |
71 |
catgatccaaaagtagaagttcaagacaatgaagatttgcttctcaatcctggattttacatcagtctgacattcggatttattataggcttctggggag |
170 |
Q |
| |
|
||||| ||||||| |||||||||| | |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14022046 |
catgaaccaaaagcagaagttcaatatgatgaagatttgcttctgaatcgtggattttacataagtctgacattcggatttattataggcttttggggag |
14021947 |
T |
|
| Q |
171 |
tatttggttcaatcctaatcaagcgttcttggagacatgcgtatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggct |
270 |
Q |
| |
|
| ||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||| || |||| |
|
|
| T |
14021946 |
tgtttggctcaatcctaatatagcgttcatggagacatgcttatttcaagttcatgaacaacttagtggatacaatttacgtgaaatgcagatgggggct |
14021847 |
T |
|
| Q |
271 |
tagagactaactggtaataataatttaac |
299 |
Q |
| |
|
| || ||||||||||| ||| |||||| |
|
|
| T |
14021846 |
caaaggttaactggtaattatactttaac |
14021818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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