View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_low_14 (Length: 338)
Name: NF17604_low_14
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 6856516 - 6856201
Alignment:
| Q |
17 |
tgcagaaagattactggaccaaaagtagagagaaaaaactaataattaacgcttcatatttatttattataatgtggcaaaaacaaaaatacttcttgat |
116 |
Q |
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| T |
6856516 |
tgcagaaagattactggaccaaaagtagacagaaaaaactaataattaacgcttcatatttatttattataatgtggcaaaaacaaaaatacttcctgat |
6856417 |
T |
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| Q |
117 |
nnnnnnntagaaaggcatccaagtctgccacgccagatagtcaaccattgggagttaacaagttctgaaatcacctggctttccttatggataggaagga |
216 |
Q |
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| T |
6856416 |
aaaaaaatagaaaggcatccaagtctgccacgccagatagtcaaccattgggagttaacaagttctgaaatcacctggctttccttatggataggaagga |
6856317 |
T |
|
| Q |
217 |
cataaattcaaaactttgtttaaattaaaagagatttatgtcatcttttatttaaacacgtatgtccaaaattaaattcttacctaggaattcgtttaag |
316 |
Q |
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| T |
6856316 |
c--aaattcaaaactttgtttaaattagaagagatttatgtcatctcttatttaaacacgtatgttcaaaattaaattccaacgtaggaatttggttaag |
6856219 |
T |
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| Q |
317 |
ttaaaagaaatttgtgtc |
334 |
Q |
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|||||||| ||||||||| |
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| T |
6856218 |
ttaaaagagatttgtgtc |
6856201 |
T |
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