View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_low_15 (Length: 334)
Name: NF17604_low_15
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 31304028 - 31304327
Alignment:
| Q |
20 |
ccacctttgggttcaaaaactaaaacagttggagaaaggtggaaggagtatcaggggatgagaaattgggacggtttgcttgatccgttggacgacattc |
119 |
Q |
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| T |
31304028 |
ccacctatggatccaaaaactaaaacacttggaaaaaggtggaaggagtatcaagggatgagaaattgggacggtttgcttgatccgttggacgacattc |
31304127 |
T |
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| Q |
120 |
tacgttgtgaaatcctacgctatggccattttgttgaagctacgtataaatcatttgagtttgatccttcatcttccaagtatgcaaattgtagatttcc |
219 |
Q |
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| T |
31304128 |
tacgttgtgaaatcctacgctatggccattttgttgaagctacgtataaatcatttgagtttgatccttcatcttccaagtatgcaaattgtagatttcc |
31304227 |
T |
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| Q |
220 |
caaaagcacactcttagaatgttgtggtttacctaacacggggtacaaagtgaccaaatacctacatgcaacttctgggattcagctaccaagttggatg |
319 |
Q |
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| T |
31304228 |
caaaagcacactcttagaatgttgtggtttacctaacacggggtacaaagtgaccaaatacctacatgcaacttctgggattcagctaccaagttggatg |
31304327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 31262064 - 31262113
Alignment:
| Q |
128 |
gaaatcctacgctatggccattttgttgaagctacgtataaatcatttga |
177 |
Q |
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| T |
31262064 |
gaaatccttcgttatggccattttgttgaagctgcatataaatcctttga |
31262113 |
T |
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