View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_low_2 (Length: 639)
Name: NF17604_low_2
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 131 - 623
Target Start/End: Original strand, 47517102 - 47517594
Alignment:
| Q |
131 |
gatagattggcgacaagagataatttgttcaaaaggggcatcttaacctcaccacatcaaaggttttgtgtgtactgcttcgcagaaccagaaaacacgc |
230 |
Q |
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| T |
47517102 |
gatagattggcgacaagagataatttgttcaaaaggggcatcttaacctcaccacatcaaaggttttgtgtgtgctgcttcgcagaaccagaaaacacgc |
47517201 |
T |
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| Q |
231 |
aacccctattccttcgatgtccatttagcattagagtttgggaccaaatatattgttggattggagtttcctttgttcaatatcatgaatcaatttccca |
330 |
Q |
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| T |
47517202 |
aacacctattccttcgatgcccatttagcgttagagtttgggaccaaatatattgttggattggagtttcctttgttcaatatcatgaaacagtttcaca |
47517301 |
T |
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| Q |
331 |
cttcttacaacacggagcactaaagagacaaaaaagtagcaggaggttcgagcttctaccgtgggcggctacagtctagtgtatacggctgcgtcagaac |
430 |
Q |
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| T |
47517302 |
cttcttacaacacggagcactaaagagacgaaaaagtagcaggaggttcgagtttctaccgcgggcggctacagtctagtgtatacggctgcgtcagaac |
47517401 |
T |
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| Q |
431 |
tacattctctttaacggaaaattaatcgatgtaaactgcatggtgtctccgattagaattacgtcatggaattggttattaggttgtagggggaacaagg |
530 |
Q |
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| T |
47517402 |
tacattctctttaacggaaaattaatcgatgtaaactgcatggtgtctccgattagaattacgtcatggaattggttattaggttgtagggggaacaagg |
47517501 |
T |
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| Q |
531 |
aggggatcccttacttgattggcgtgtaagtcccatggactgtttttaattgatacaacttagtactctatttgctcctattgggttgagtat |
623 |
Q |
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| T |
47517502 |
aggggatcccttacttgattggcgtgtaagtcccatggactgtttttaattgatacaacttagtactctatttgctcctattgggttgagtat |
47517594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 47516915 - 47517028
Alignment:
| Q |
16 |
ggcagaaaatatagcagattcatgggtttcggctctggatccaccgtgcagttttacggtaaaatcatattactcattgctgtccaaggttagtttttca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47516915 |
ggcagaaaatatagcagattcatgggtttcggctctggatccaccgtgcagttttacggtaaaatcatattactcattgctgtctaaggttagtttttca |
47517014 |
T |
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| Q |
116 |
gcagaaaatatgga |
129 |
Q |
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| T |
47517015 |
gcagaaaatatgga |
47517028 |
T |
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