View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_low_22 (Length: 262)
Name: NF17604_low_22
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 6153726 - 6153966
Alignment:
| Q |
10 |
agattatactgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtt |
109 |
Q |
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| T |
6153726 |
agattatattgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtcaagaatgtt |
6153825 |
T |
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| Q |
110 |
tgtccagtctgtaaggagatagctctgaggatttatgatgaagatgaataattgtttacttgagtggagattgttggtcttttaagtgtgagttaaaaat |
209 |
Q |
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| T |
6153826 |
tgtccagtctgtaaggagatagctctgaggatttatgatgaagatgaataattgtttacttgagtggagattgttggtgttttaagtatgagttaaaagt |
6153925 |
T |
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| Q |
210 |
ctcgcattaaattgaaaaatagac-atccatatataaatgt |
249 |
Q |
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| T |
6153926 |
ctcgcattgaattgaaaaatagacggtcgatatataaatgt |
6153966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 6147489 - 6147597
Alignment:
| Q |
10 |
agattatactgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtt |
109 |
Q |
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| T |
6147489 |
agattatattgatggggagcatattggaagacttaattgtactcac------acatatcattttgattgcatcgaacaatggttgggggtgaagaatgtt |
6147582 |
T |
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| Q |
110 |
tgtccagtctgtaag |
124 |
Q |
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| T |
6147583 |
tgtccagtctgtaag |
6147597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 33800591 - 33800483
Alignment:
| Q |
10 |
agattatactgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtt |
109 |
Q |
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| T |
33800591 |
agattttattgatggggagtgtattgggagacttgattgcaatcac------atatatcatcttaactgcatcaaacaatggttggaggagaagaatgtt |
33800498 |
T |
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| Q |
110 |
tgtccagtctgtaag |
124 |
Q |
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| T |
33800497 |
tgtccaatctgtaag |
33800483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 6121040 - 6121114
Alignment:
| Q |
62 |
atatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaaggagatagctctg |
136 |
Q |
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| T |
6121040 |
atatttcatcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggagacagctctg |
6121114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 6128294 - 6128402
Alignment:
| Q |
10 |
agattatactgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtt |
109 |
Q |
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| T |
6128294 |
agattatattgatggggagcatattggaagacttcactg----cac--tcacatatatcatcttgattgcatcaaacaatggtttgaggtgaagaatgct |
6128387 |
T |
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| Q |
110 |
tgtccagtctgtaag |
124 |
Q |
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| T |
6128388 |
tgtccattctgtaag |
6128402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 33729432 - 33729366
Alignment:
| Q |
58 |
tcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
124 |
Q |
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| T |
33729432 |
tcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgtccaatctgtaag |
33729366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 9886570 - 9886623
Alignment:
| Q |
67 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctg |
120 |
Q |
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| T |
9886570 |
tcatcttgactgcatcaaacaatggttggagttgaagaatgtctgtccaatctg |
9886623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 9884863 - 9884815
Alignment:
| Q |
67 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtcca |
115 |
Q |
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| T |
9884863 |
tcatcttgactgcatcaaacaatggttggagttgaagaatttatgtcca |
9884815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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