View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_low_23 (Length: 253)
Name: NF17604_low_23
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 9540790 - 9541025
Alignment:
| Q |
4 |
tactacaattgagtgttttacgcaagaacaaagcgataccacccctacttactatatcaggtgnnnnnnnnnnnnnnnnncccaacaaataacgaaattc |
103 |
Q |
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| T |
9540790 |
tactacagttgagtgttttacgccagaacaaagcgataccacccctacttactatatcaagtgaaaaacaaaaatcaaaacccaacaaataatgaaattc |
9540889 |
T |
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| Q |
104 |
ttcgattttattggtgtggactaaagtctcacttaaaaacaaaacatccaaattataatactggactatgaattttagttgagaaacaacacttaggttt |
203 |
Q |
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| T |
9540890 |
ttcaattttattggtgtggactaaagtctcacttaaaaacagaacatccaaattataatactggactataaattttagttgagaaacaacacttaggttt |
9540989 |
T |
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| Q |
204 |
ctcatacatcagcagttccaacatacaagacccatg |
239 |
Q |
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| T |
9540990 |
ctcatacctcagcagttccaacatacaagacccatg |
9541025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 14861041 - 14861154
Alignment:
| Q |
89 |
caaataacgaaattcttcgattttattggtgtggactaaagtctcacttaaaaacaaaacatccaaattataatactggactatgaattttagttgagaa |
188 |
Q |
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| T |
14861041 |
caaataacaaaattcttctgttttattagcgtggactaaagtctcacttaaaaatagaacatccgacttaaaatagcggactaggtattatagtttaaaa |
14861140 |
T |
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| Q |
189 |
acaacacttaggtt |
202 |
Q |
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| T |
14861141 |
actacgcttaggtt |
14861154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 25132094 - 25132045
Alignment:
| Q |
133 |
cacttaaaaacaaaacatccaaattataatactggactatgaattttagt |
182 |
Q |
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| T |
25132094 |
cacttaaaaatagaacatccaacttataataccggactatgaattttagt |
25132045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 32658000 - 32658061
Alignment:
| Q |
85 |
ccaacaaataacgaaattcttcgattttattggtgtggactaaagtctcacttaaaaacaaa |
146 |
Q |
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| T |
32658000 |
ccaacaagtagcgaaattcctcaattttatttatgtggactaatatctcacttaaaaacaaa |
32658061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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