View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_low_4 (Length: 508)
Name: NF17604_low_4
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 44 - 496
Target Start/End: Original strand, 26491135 - 26491587
Alignment:
| Q |
44 |
tgaagtgaacttatgactgcctatgtggtgcaaatagatttagaataaggatgacatcattttgtgcaacgtatagaggttaatgagaatcatatttatg |
143 |
Q |
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| T |
26491135 |
tgaagtgaacttacgactgcctatgtggtgcaaatagatttggaataaggatgacatcattttgtgcaacgtatagaggtcaatgagagtcatatttatg |
26491234 |
T |
|
| Q |
144 |
ctttaatattaaaatgttacacacatatatgtgttgcctacactacttaaaattcctggatccgtcttaacaccgatattatacatgaattaaatccata |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
26491235 |
ctttaatattaaaatgttacacacatatatgtgttgcctacactacttaaaattcctgaatccatcttaacaccgatattatacatgaattaaatccata |
26491334 |
T |
|
| Q |
244 |
aactgatgtcttagcttagcatatgtcctcagacataatttctatttcagcccaccaaagaggggatgattttggagttgctccatcaggtcccatatca |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26491335 |
aactgatgtcttagcttagcatatgtcctcagacataatttctatttcagcccaccaaagaggggatgattttggagttgctccatcaggccccatatca |
26491434 |
T |
|
| Q |
344 |
gtaatctccttcaacttagatgtaatctctttcattgatggtcttgtttcttgatcaagatctacacaattgttaatcacttcacaccatttctcaattt |
443 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26491435 |
gtaatctccttcaatttagatgtaatctctttcattgatgaccttgtttcttgatcaagatctacacaattgttaatcacttcacaccatttctcaattt |
26491534 |
T |
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| Q |
444 |
catcatctttcaaagagttcaagcttgtatcaaccatctctctcaatggttgt |
496 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26491535 |
catcatctttcaaagagttcaaccttgtatcaaccatctctctcaatggttgt |
26491587 |
T |
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