View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_low_8 (Length: 407)
Name: NF17604_low_8
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 2324525 - 2324147
Alignment:
| Q |
18 |
tctagaacacctaaattagctgcttgtgaggagctcccagcctcggttttaggccattggacaagcaaagcattaccccacatgtgtttctgaacttcat |
117 |
Q |
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| T |
2324525 |
tctagaacacctaaattagctgcttgtgaggagctcccagcctcggttttaggccattggacaagcaaagcattaccccacatgtgtttctgaacttcat |
2324426 |
T |
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| Q |
118 |
ctagccttgtttttgcaaaatctgcaccatgcgtcactgcaaaaattcattatgttaacagtagtaactaagcactccactttagttcaaaaatctctat |
217 |
Q |
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| T |
2324425 |
ctagccttgtttttgcaaaatctgcaccatgcgtcactgcaaaaattcattatgttaacagtagtaactaagcactccactttagttcaaaaatctctat |
2324326 |
T |
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| Q |
218 |
agtcctaaaatcacacacatgattgtatactagagttaaggttaagagcatttatcaaaatatggaaacacttggtaaatcaagtaccatgctttatgcc |
317 |
Q |
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| T |
2324325 |
agtcctaaaatcacacacatgattgtatactagagttaaggttaagagcatttatcaaaatatggaaacacttggtaaatcaagtaccatgctttatgcc |
2324226 |
T |
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| Q |
318 |
tctcaaaaattcttagcaattagataatcaagtagcatctgctcagttatcattacttttcttgttttgaaaaattcat |
396 |
Q |
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| T |
2324225 |
tctcaaaaattcttagcaattagataatcaagtagcatctgctcagttatcattacttttcttgttttgaaaaattcat |
2324147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 2324119 - 2324035
Alignment:
| Q |
212 |
ctctatagtcctaaaatcacacacatgattgtatactagagttaaggttaagagcatttatcaaaatatggaaacacttggtaaat |
297 |
Q |
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| T |
2324119 |
ctctatagtcctaaaatctcaca-atcattgtataatagaggtaaggttaagaacatatagcacaatgaggaaaaatttggtaaat |
2324035 |
T |
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