View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17604_low_9 (Length: 388)
Name: NF17604_low_9
Description: NF17604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17604_low_9 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 5420 - 5058
Alignment:
| Q |
19 |
gttcagtccaaaccatcttatggaactagatgcagctgagtatgaagaaatacctggtgctccaagactaagtttcaatatatcctacaaagtatgctat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420 |
gttcagtccaaaccatcttatggaactagatgcagctgagtatgaagaaatacctggtgctccaagactaagtttcaatatatcctacaaagtatgctat |
5321 |
T |
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| Q |
119 |
gcttaattttatcannnnnnnnatttgctttgtctgcagtcacgatttcacgctcacgaagtcaacacatcggtagccattaaatcgagatcgcacgttg |
218 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5320 |
gcttaattttatcattttttttatttgctttgtctgcagtcacgatttcacgctcacgaagtcaacacatcggtagccattaaatcgagatcgcacgttg |
5221 |
T |
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| Q |
219 |
cagatttcaagctcgatattttagagtgnnnnnnnntcaaaacctgcttgctttctacaccgttcgaacccgatccaaggactaccgatgtgttgacttc |
318 |
Q |
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| T |
5220 |
cagatttcaagctcgatattttagagtgaaaaaaaatcaaaacctgcttgctttctacaccgttcgaacccgatccaaggactaccgatgtgttgacttc |
5121 |
T |
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| Q |
319 |
atgaatgtgtgggattgtgattgcatgcaatccgaagccttttcaatatgttatttcatctca |
381 |
Q |
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| T |
5120 |
atgaatgtgtgggattgtgattgcatgcaatccgaagccttttcaatatgttatttcatctca |
5058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 5420 - 5058
Alignment:
| Q |
19 |
gttcagtccaaaccatcttatggaactagatgcagctgagtatgaagaaatacctggtgctccaagactaagtttcaatatatcctacaaagtatgctat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420 |
gttcagtccaaaccatcttatggaactagatgcagctgagtatgaagaaatacctggtgctccaagactaagtttcaatatatcctacaaagtatgctat |
5321 |
T |
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| Q |
119 |
gcttaattttatcannnnnnnnatttgctttgtctgcagtcacgatttcacgctcacgaagtcaacacatcggtagccattaaatcgagatcgcacgttg |
218 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5320 |
gcttaattttatcattttttttatttgctttgtctgcagtcacgatttcacgctcacgaagtcaacacatcggtagccattaaatcgagatcgcacgttg |
5221 |
T |
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| Q |
219 |
cagatttcaagctcgatattttagagtgnnnnnnnntcaaaacctgcttgctttctacaccgttcgaacccgatccaaggactaccgatgtgttgacttc |
318 |
Q |
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| T |
5220 |
cagatttcaagctcgatattttagagtgaaaaaaaatcaaaacctgcttgctttctacaccgttcgaacccgatccaaggactaccgatgtgttgacttc |
5121 |
T |
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| Q |
319 |
atgaatgtgtgggattgtgattgcatgcaatccgaagccttttcaatatgttatttcatctca |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5120 |
atgaatgtgtgggattgtgattgcatgcaatccgaagccttttcaatatgttatttcatctca |
5058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 44207932 - 44207900
Alignment:
| Q |
23 |
agtccaaaccatcttatggaactagatgcagct |
55 |
Q |
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| T |
44207932 |
agtccaaaccatcttatggaactagatgcagct |
44207900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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