View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_high_18 (Length: 318)
Name: NF17605_high_18
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 47566819 - 47566628
Alignment:
| Q |
112 |
ttaagaaaaatgagaaaatgattatatagcgnnnnnnncaaatatttcttaaactggtaagaattttatcttttgagctatttttcttaattaatgaaaa |
211 |
Q |
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| T |
47566819 |
ttaagaaaaatgagaaaatgattatatagctaaaaaaacaaatatttcttaaactggttagaattttatcttttgagctatttctcttaattaatgaaaa |
47566720 |
T |
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| Q |
212 |
gaagaaaaaatgaaaacagattgtaggggtctctaatatgcattgtgaatatagacaatttccaacaacaaattattatattagcttattgt |
303 |
Q |
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| T |
47566719 |
gaagaaaaaatgaaaacagaatgtaggggtctctaatatgcattgtgaatatagacaatttccaacaacaaattattatattagcttattgt |
47566628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 47567436 - 47567354
Alignment:
| Q |
17 |
aatatcctagtaatatcactagatttccgtgttgaagcttggctataacaagaacctcattttttaactctgttgcaccttgcc |
100 |
Q |
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| T |
47567436 |
aatatcctagtaatctcactagatgtctatgttgaagcttggctataacaagaacctcat-ttttaactctgttgcaccttgcc |
47567354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 47574315 - 47574228
Alignment:
| Q |
20 |
atcctagtaatatcactagatttccgtgttgaagcttggctataacaagaacctcattttttaactctgttgcaccttgcctggagct |
107 |
Q |
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| T |
47574315 |
atcctagtaatcttactagatttctgtgttgaagcttggctataacatgaacctcatttttaaactctactgcaccttgcccggagct |
47574228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 47584032 - 47583954
Alignment:
| Q |
20 |
atcctagtaatatcactagatttccgtgttgaagcttggctataacaagaacctcattttttaactctgttgcaccttg |
98 |
Q |
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| T |
47584032 |
atcctagtaatctcactagatttctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttg |
47583954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 47573659 - 47573597
Alignment:
| Q |
155 |
atttcttaaactggtaagaattttatcttttgagctatttttcttaattaatgaaaagaagaa |
217 |
Q |
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| T |
47573659 |
atttcataaactggtaagaattttatcttttgagctatttctcttgattgttgaaaataagaa |
47573597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 47568019 - 47567943
Alignment:
| Q |
32 |
tcactagatttccgtgttgaagcttggctataacaagaacctcattttttaactctgttgcaccttgcctggagctt |
108 |
Q |
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| T |
47568019 |
tcactagatttacgtgctgaagtcaagctataacaagaacctcattattcaattcttttgcaccttgcttggagctt |
47567943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 47583372 - 47583308
Alignment:
| Q |
150 |
caaatatttcttaaactggtaagaattttatcttttgagctatttttcttaattaatgaaaagaa |
214 |
Q |
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| T |
47583372 |
caaatatttcttaaactgataagtattttatatttttagctatttatcttgaatgatgaaaagaa |
47583308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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