View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17605_high_2 (Length: 612)

Name: NF17605_high_2
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17605_high_2
NF17605_high_2
[»] chr5 (4 HSPs)
chr5 (242-594)||(28385172-28385524)
chr5 (246-594)||(12540523-12540871)
chr5 (13-197)||(28385569-28385753)
chr5 (13-197)||(12540920-12541104)
[»] chr7 (2 HSPs)
chr7 (246-594)||(3417520-3417868)
chr7 (22-194)||(3417296-3417468)
[»] chr2 (6 HSPs)
chr2 (248-594)||(13448201-13448547)
chr2 (246-576)||(13440056-13440386)
chr2 (246-592)||(13454674-13455020)
chr2 (13-197)||(13440435-13440619)
chr2 (15-197)||(13448598-13448780)
chr2 (47-195)||(13455071-13455219)
[»] chr4 (8 HSPs)
chr4 (246-594)||(48957982-48958333)
chr4 (251-594)||(48965167-48965510)
chr4 (82-197)||(48958382-48958497)
chr4 (82-197)||(48912171-48912286)
chr4 (118-192)||(48974349-48974423)
chr4 (538-594)||(48967296-48967352)
chr4 (246-372)||(48961353-48961482)
chr4 (128-174)||(48965587-48965633)
[»] chr6 (3 HSPs)
chr6 (13-195)||(12589926-12590108)
chr6 (14-197)||(12483222-12483405)
chr6 (246-342)||(12483454-12483556)
[»] scaffold0536 (2 HSPs)
scaffold0536 (82-197)||(6337-6452)
scaffold0536 (508-594)||(6766-6852)
[»] chr8 (2 HSPs)
chr8 (120-197)||(12641345-12641422)
chr8 (548-592)||(12641776-12641820)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 242 - 594
Target Start/End: Complemental strand, 28385524 - 28385172
Alignment:
Q  242 tggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgg 341  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385524 tggctgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgg 28385425  T
Q  342 ggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaa 441  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385424 ggggatttctgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaa 28385325  T
Q  442 tgagaaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccaga 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28385324 tgagaaattgataacaacagtccgaagaattggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcaga 28385225  T
Q  542 gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctga 594  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28385224 gataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctga 28385172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 246 - 594
Target Start/End: Complemental strand, 12540871 - 12540523
Alignment:
Q  246 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 345  Q
    |||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  12540871 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 12540772  T
Q  346 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 445  Q
    |||| |||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||   ||| |||    
T  12540771 atttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgag 12540672  T
Q  446 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 545  Q
    ||| | ||||||   |||||| |||||||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||||   |||||||     
T  12540671 aaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatg 12540572  T
Q  546 acatagagaaggctatgaggagattgatggacggtggcgatgaagctga 594  Q
     |||||||||||||||||||||||||||||| |||||  ||||||||||    
T  12540571 gcatagagaaggctatgaggagattgatggatggtggttatgaagctga 12540523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 28385753 - 28385569
Alignment:
Q  13 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28385753 agcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagc 28385654  T
Q  113 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 197  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  28385653 ataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctg 28385569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 12541104 - 12540920
Alignment:
Q  13 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 112  Q
    ||||| || |||||| ||| ||| || |||||||||||||| ||| | ||||||||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  12541104 agcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagc 12541005  T
Q  113 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 197  Q
    ||||| ||||||| ||| |||||||||||||||||||| || ||| |||||| |   ||||||||||||||||||||||||||||    
T  12541004 ataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcctg 12540920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 246 - 594
Target Start/End: Original strand, 3417520 - 3417868
Alignment:
Q  246 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||| |||| |||||||||| |||||||||| |||||    
T  3417520 tgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtaggggg 3417619  T
Q  346 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 445  Q
    |||| |||||||||| |||||||||||| |||| || |||||||| || |||||||||||||||||||||||  |||||| |||||| ||   |||||||    
T  3417620 atttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgag 3417719  T
Q  446 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 545  Q
    ||| | ||||||  ||||||| |||||||||||||||||||||  || |||||| || || |||||| ||||||||||||||||||||||| |||||||     
T  3417720 aaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagcagagatg 3417819  T
Q  546 acatagagaaggctatgaggagattgatggacggtggcgatgaagctga 594  Q
    ||||||||||||| |||||||||||||||||| || | ||||| |||||    
T  3417820 acatagagaaggcaatgaggagattgatggacagtagtgatgaggctga 3417868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 3417296 - 3417468
Alignment:
Q  22 gggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccat 121  Q
    |||||||||| ||| || ||| ||||| |||||||||   |||||||| ||||| | ||||||||||||  ||||| |||||||||||||| ||||| ||    
T  3417296 gggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactat 3417395  T
Q  122 ttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttc 194  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  3417396 ttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttc 3417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 6e-82; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 248 - 594
Target Start/End: Complemental strand, 13448547 - 13448201
Alignment:
Q  248 ccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggat 347  Q
    |||||||||||||| |||||||| || || ||||||||||| || || ||||||||||||||||| |||  |||||||||| ||||||| ||||||||||    
T  13448547 ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggat 13448448  T
Q  348 ttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaa 447  Q
    || |||| |||||||||||||||||||  ||||| |||||| | ||||||||||||||||||||||||||   ||||| |||||| |||  |||||||||    
T  13448447 ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaa 13448348  T
Q  448 attgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagataac 547  Q
    | ||||||||  | ||||| |||||||||| ||||| ||||  || ||||||||||| | ||||   | ||||||||||||||| |||| |||||||| |    
T  13448347 actgataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagcagagatagc 13448248  T
Q  548 atagagaaggctatgaggagattgatggacggtggcgatgaagctga 594  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||    
T  13448247 atagagaaggctgtaaggagattgatggacggtggtgatgaagctga 13448201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 246 - 576
Target Start/End: Complemental strand, 13440386 - 13440056
Alignment:
Q  246 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 345  Q
    |||| |||||||| || |||||||||||| | | || |||||| || || | |||||||||||||||||||  |||||||||| ||||||||||||||||    
T  13440386 tgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgggggg 13440287  T
Q  346 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 445  Q
    |||| |||| ||||||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||   ||||| |||||| |||  ||| |||    
T  13440286 atttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgag 13440187  T
Q  446 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 545  Q
    ||| || |||||  | | ||| |||||||||||||||| ||||  |||||||||||||  ||||||  || ||||||| |||||||||||| ||| ||||    
T  13440186 aaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagggata 13440087  T
Q  546 acatagagaaggctatgaggagattgatgga 576  Q
    |||||||||||||| ||||||||||||||||    
T  13440086 acatagagaaggctgtgaggagattgatgga 13440056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 246 - 592
Target Start/End: Complemental strand, 13455020 - 13454674
Alignment:
Q  246 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 345  Q
    |||||||||||||||| |||| |||||| |  || |||||||| || || |||||||||||||||||||||  |||||||||  ||||||| ||||||||    
T  13455020 tgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgggggg 13454921  T
Q  346 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 445  Q
    |||| |||| |||||||||||||||||||| ||||| |||||| ||  ||||||||||||||||||||||||    |||| |||||| |||  ||| |||    
T  13454920 atttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctacaacgag 13454821  T
Q  446 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 545  Q
    ||| | ||||||  ||| ||| |||||||| | ||||| ||||  || ||||||||||||| ||||  || ||||||| |||||||||||| || |||||    
T  13454820 aaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatggtgtacaagtggtgttgcggagagagagaagttggtgagcaaagata 13454721  T
Q  546 acatagagaaggctatgaggagattgatggacggtggcgatgaagct 592  Q
     ||||||||||||| ||||||||||||||| |||||| |||||||||    
T  13454720 gcatagagaaggctgtgaggagattgatgggcggtggtgatgaagct 13454674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 13440619 - 13440435
Alignment:
Q  13 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 112  Q
    |||||||| |||||| ||| ||||||||| |  |||||| ||| |||  |||||| | ||| ||  ||||||||| ||  ||||| ||||||||||||||    
T  13440619 agcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaagc 13440520  T
Q  113 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 197  Q
    || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13440519 atcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctg 13440435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 13448780 - 13448598
Alignment:
Q  15 cagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcat 114  Q
    |||||| |||||| ||| ||| |||||  | ||||||| ||||||  |||||| | ||| || |||||||||||||  ||||| ||||||||||||||||    
T  13448780 cagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 13448681  T
Q  115 aaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 197  Q
     ||| |||| ||||||||||||||||| ||||| || || || ||||||||||| ||||||||||||||||||||||||||||    
T  13448680 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctg 13448598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 47 - 195
Target Start/End: Complemental strand, 13455219 - 13455071
Alignment:
Q  47 cacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgaga 146  Q
    ||||||||||||| ||||||  | ||| || |||||||||||||  ||||| |||||||||||||||| ||  |||  ||| ||||||||||||||||||    
T  13455219 cacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcatcaattattcatctaataaacaactatatgaga 13455120  T
Q  147 ttgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 195  Q
    | || ||| || |||||||| ||||||| || |||||||||||||||||    
T  13455119 tggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttcc 13455071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 246 - 594
Target Start/End: Complemental strand, 48958333 - 48957982
Alignment:
Q  246 tgccgaagggatttgaggagagaaacattggaaagaag---ggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggg 342  Q
    ||||||| ||||| || |||||||||||||||||||||   ||||| || || ||||| ||||||||||||||| ||||  ||||| ||  ||| |||||    
T  48958333 tgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtggg 48958234  T
Q  343 gggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaat 442  Q
     | |||| |||||||||||||| ||||||| | ||| || |||||| ||||||| ||||||||||| ||||||||    |||| ||| || |||  ||||    
T  48958233 tgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattctacaat 48958134  T
Q  443 gagaaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagag 542  Q
    ||||| |||||||| |  || ||| ||||||| ||||| || ||||  || || ||||||  ||| |||  || ||||| | ||||| | ||||  | ||    
T  48958133 gagaagttgataactaatgtgcgaggaattggggtggaggttggtgcaacagagtggtgtgtaaacggttttgaggagaaacagaagattgtgagtaaag 48958034  T
Q  543 ataacatagagaaggctatgaggagattgatggacggtggcgatgaagctga 594  Q
    |||  ||||| |||||| ||| |||||||||||||||||| |||||||||||    
T  48958033 atagtatagaaaaggctgtgaagagattgatggacggtggtgatgaagctga 48957982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 251 - 594
Target Start/End: Complemental strand, 48965510 - 48965167
Alignment:
Q  251 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc 350  Q
    |||||||| || |||||||||||||||||||||||||| || || ||||||||||| || || ||||||||  ||||| |||| || ||||| |  |||     
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  351 tgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaatt 450  Q
    |||| ||||| ||  ||||||| |  || || |||||||| ||||| ||||| ||||| || |||||||  |||| ||| || |||  ||| || ||| |    
T  48965410 tgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaact 48965311  T
Q  451 gataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagataacata 550  Q
    |||||||  ||| ||| | |||||||||||||| ||||  || |||||||||   | ||||  ||  || ||| ||||| ||||||  || |||| ||||    
T  48965310 gataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcata 48965211  T
Q  551 gagaaggctatgaggagattgatggacggtggcgatgaagctga 594  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||    
T  48965210 gagaaggctgtgaggagattgatggacagtggtgatgaagctga 48965167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 48958497 - 48958382
Alignment:
Q  82 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 181  Q
    |||||||||  ||||| |||| ||||||||||||    |||| |||||||||||||| |||||||||||||| |  ||||||||||||||||||  |||     
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaattt 48958398  T
Q  182 atatgggttgttcctg 197  Q
     |||||||||||||||    
T  48958397 gtatgggttgttcctg 48958382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 48912171 - 48912286
Alignment:
Q  82 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 181  Q
    |||||| || |||||| |||| |||||||||  |   ||||| || ||||||||||| ||||||||||||||||  || ||||||||  |||||  ||||    
T  48912171 taactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 48912270  T
Q  182 atatgggttgttcctg 197  Q
    ||||||||||||||||    
T  48912271 atatgggttgttcctg 48912286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 48974423 - 48974349
Alignment:
Q  118 ccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgt 192  Q
    ||||||| || |||| ||| | |||||||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  48974423 ccatttcactaataagcaattgtatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgt 48974349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 594
Target Start/End: Complemental strand, 48967352 - 48967296
Alignment:
Q  538 cagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctga 594  Q
    |||||||||||||||||| ||||| || ||||||||||||  || ||||||||||||    
T  48967352 cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctga 48967296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 372
Target Start/End: Complemental strand, 48961482 - 48961353
Alignment:
Q  246 tgccgaagggatttgaggagagaaacattgga---aagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggg 342  Q
    ||||||| |||||||| ||||||||||||| |   ||||||||||| || || | ||| ||||||||||||||| ||||  || || || | ||||||||    
T  48961482 tgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtggg 48961383  T
Q  343 gggatttctgacacattgcggggggaactc 372  Q
     |  ||| |||| ||||||||| |||||||    
T  48961382 tgtgtttatgacgcattgcgggtggaactc 48961353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 48965633 - 48965587
Alignment:
Q  128 gataaacaactatatgagattgcgtgcgcaatagaagcatcaggtca 174  Q
    |||||||| || |||||||||||||| |||||||||||||| |||||    
T  48965633 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtca 48965587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 12589926 - 12590108
Alignment:
Q  13 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 112  Q
    |||||| | |||||| ||||||| ||||| || ||| ||||| ||||  ||||| || ||  |||||| |||||| ||  ||||| |||| ||||| |||    
T  12589926 agcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagc 12590025  T
Q  113 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 195  Q
    |||  | ||||||| ||||||||||| ||||||||| |||| |  |||||||||||||| |||  |||| |||||||| ||||    
T  12590026 atatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 12483222 - 12483405
Alignment:
Q  14 gcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagca 113  Q
    ||||||| |||||||||||||| |||||||| ||| ||||| |  |  ||||| || ||| ||| ||  || |||||  ||||| |||| ||||| |||     
T  12483222 gcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcc 12483321  T
Q  114 taaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 197  Q
    ||  | |||||||||||||||| || || || ||| | |||| |||||||||||| ||| |   ||||||||||||||||||||    
T  12483322 tatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctg 12483405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 246 - 342
Target Start/End: Original strand, 12483454 - 12483556
Alignment:
Q  246 tgccgaagggatttgaggagagaaacattgga------aagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggt 339  Q
    ||||||||||||||||||||||||||||| ||      |||| |||||| || |||||||| ||||| ||||| || ||||| |||||| ||||||| ||    
T  12483454 tgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagt 12483553  T
Q  340 ggg 342  Q
    |||    
T  12483554 ggg 12483556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 6337 - 6452
Alignment:
Q  82 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 181  Q
    |||||||||  ||||| |||| ||||||||| ||  || |||| | ||||||||||| || |||||||| || |  ||||||||||| ||||||  ||||    
T  6337 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 6436  T
Q  182 atatgggttgttcctg 197  Q
    ||||||||||||||||    
T  6437 atatgggttgttcctg 6452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 594
Target Start/End: Original strand, 6766 - 6852
Alignment:
Q  508 tggtaatggggagagaaagaagttggtgaccagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctga 594  Q
    ||||| |||||||||| ||||| |||||   || ||||  || ||||||||| |||||||||||||||| ||||| || ||||||||    
T  6766 tggtattggggagagagagaaggtggtggggagggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctga 6852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 12641345 - 12641422
Alignment:
Q  120 atttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 197  Q
    ||||||||||||||||||| || ||||||||| ||| |||||||   |||||||||  |||  |||||||||||||||    
T  12641345 atttctctgataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctg 12641422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 592
Target Start/End: Original strand, 12641776 - 12641820
Alignment:
Q  548 atagagaaggctatgaggagattgatggacggtggcgatgaagct 592  Q
    |||||||| ||| |||||||||||||||||| ||| |||||||||    
T  12641776 atagagaaagctgtgaggagattgatggacgatggtgatgaagct 12641820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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