View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_high_29 (Length: 250)
Name: NF17605_high_29
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_high_29 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 31033796 - 31034009
Alignment:
| Q |
19 |
aaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033796 |
aaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttc |
31033895 |
T |
|
| Q |
119 |
tacaccagatctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattgaatatccaaaccctgatgat |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31033896 |
tacaccagatctcccctaatcttctgacttgacgccaactcctaaaaaaggtaaagggttagtccacgacttcgatattgaatatccaaaccctgatgat |
31033995 |
T |
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| Q |
219 |
tatgaccttatcca |
232 |
Q |
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|||||||||||||| |
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| T |
31033996 |
tatgaccttatcca |
31034009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 31098170 - 31097993
Alignment:
| Q |
27 |
tcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttctacaccag |
126 |
Q |
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|||| |||||||||| ||| ||||||| |||||||||||||||||| || ||||||||||| ||||||||||||| |||||| ||||| | ||||| | |
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| T |
31098170 |
tcaagacattgcattgccttcctcccacttcagaagtaatgattttaactatccctgactacaatgccagcctgagtcagatacgagatatttacacaaa |
31098071 |
T |
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| Q |
127 |
atctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattgaatatc |
204 |
Q |
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| T |
31098070 |
acctcccctagtcttctgactcgatgccaagtcctaaacaaactaaaggtttagtccaccactgcgatattgtatatc |
31097993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 31207 - 30994
Alignment:
| Q |
19 |
aaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttc |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
31207 |
aaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagaaatgggatttc |
31108 |
T |
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| Q |
119 |
tacaccagatctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattgaatatccaaaccctgatgat |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |
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| T |
31107 |
tacaccagatctcccctaatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacaactttgatattgcatatccaaacctcgatgat |
31008 |
T |
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| Q |
219 |
tatgaccttatcca |
232 |
Q |
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| |||||||||||| |
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| T |
31007 |
tttgaccttatcca |
30994 |
T |
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