View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_high_3 (Length: 539)
Name: NF17605_high_3
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Complemental strand, 51842329 - 51841808
Alignment:
| Q |
18 |
cttcttccctttcaattcacttcttcaacacagatcttcgcttcattcttacgtaaccactcactctcaccaaccaccataacctgctaaatccaactcc |
117 |
Q |
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| T |
51842329 |
cttcttccctttcaattcacttcttcaacacagatcttcgcttcattcttacgtaaccactcactctcaccaaccaccataacctgctaaatccaactcc |
51842230 |
T |
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| Q |
118 |
atttctttcctttcgctaaacaaccactttcaccattactttacctcatgatggtggaaacctcaacattaggtcggttccatcaccaaagactcgactt |
217 |
Q |
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| T |
51842229 |
atttctttcctttcgctaaacaaccactttcaccattactttacctcatgatggtggaaacctcaacattaggtcggttccatcaccaaagactcgactt |
51842130 |
T |
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| Q |
218 |
taaacgctgcgttccagcattcataacctcacacaacaccctcgtcatggtcttatggatcgcagcatttttatcggtttttatatggcggagaaatatg |
317 |
Q |
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| T |
51842129 |
taaacgctgcgttccagcattcataacctcacacaagaccctcttcatggtcttatggatcgcagcatttttatcggtttttatatggcagagaaatatg |
51842030 |
T |
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| Q |
318 |
gttgttggtgggtttatggtttttggtcgggttccggtccggccgattccaaagaggaggccggcggtttttaatttgacggattttggaggtgttggtg |
417 |
Q |
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| T |
51842029 |
gttgttggtgggtttatggttttcggtcgggttccggtccggccgattccaaatatgagaccggtggtttttaatttgacggattttggaggtgttggtg |
51841930 |
T |
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| Q |
418 |
atggggttactcttaatactgaagcatttgagagagctgtttctgctatatctaaattcgggaagaaaggtggggcccagttgaatgttcctcctggtcg |
517 |
Q |
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| T |
51841929 |
atggggttactcttaatactgaagcatttgagagagctgtttctgctatatctaaattcgggaagaaaggtggggcccagttgaatgttcctcctggtcg |
51841830 |
T |
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| Q |
518 |
ttggcttactgcaccttttaat |
539 |
Q |
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| T |
51841829 |
ttggcttactgcaccttttaat |
51841808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 383 - 527
Target Start/End: Original strand, 18637153 - 18637297
Alignment:
| Q |
383 |
ggtttttaatttgacggattttggaggtgttggtgatggggttactcttaatactgaagcatttgagagagctgtttctgctatatctaaattcgggaag |
482 |
Q |
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| T |
18637153 |
ggtttttaatttgactgattttggtggtgttggtgatggtgttactcttaatactaaggcttttgaaagagctgtttctgttatttctaagtttaggaat |
18637252 |
T |
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| Q |
483 |
aaaggtggggcccagttgaatgttcctcctggtcgttggcttact |
527 |
Q |
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| T |
18637253 |
cagggtggtgctcagttgaatgtgcctcctggtttttggcttact |
18637297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 18644849 - 18644903
Alignment:
| Q |
383 |
ggtttttaatttgacggattttggaggtgttggtgatggggttactcttaatact |
437 |
Q |
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| T |
18644849 |
ggttttcaatttgactgattttgatggggttggtgatggagttactcttaatact |
18644903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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