View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_high_36 (Length: 230)
Name: NF17605_high_36
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 23460016 - 23459827
Alignment:
| Q |
1 |
taagaagaataataatggttctgttaagggtcttttctttttaaatgatacagatcaaagatcttgattttcccaaaaaataatatagtgtttgtagtct |
100 |
Q |
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| T |
23460016 |
taagaagaataataatggttctgttaatggtctttcctttttaaatgatacagatcaaagatcttggttttcccacaaaataatatagtgtttgtaatct |
23459917 |
T |
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| Q |
101 |
ctctgctagtcattcattccaatgcatattccaaatagtatcttttctccaacagaaagtaatttgttaatttaattacttggtttgatt |
190 |
Q |
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| T |
23459916 |
ctctgctactcattatttccaatgcatattccaaatagtatcttttctccaacagaaagtaattttttaatttaattacttggtttgatt |
23459827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 23497090 - 23496958
Alignment:
| Q |
2 |
aagaagaataataatggttctgttaagggtcttttctttttaaatgatacagatcaaagatcttgattttcccaaaaaataata-tagtgtttgtagtct |
100 |
Q |
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||||||||| |||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||| || ||| |||| | |||||| || ||| |
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| T |
23497090 |
aagaagaatgataatggttctgttgatggtctttcctttttaaatgatacagatcaaagatcttggttttctcacaaatcaatactggtgtttctaatct |
23496991 |
T |
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| Q |
101 |
ctctgctagtcattcattccaatgcatattcca |
133 |
Q |
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|||| || | |||||||| ||||| ||||||| |
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| T |
23496990 |
ctctaatactgattcattctaatgcgtattcca |
23496958 |
T |
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