View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17605_high_38 (Length: 222)
Name: NF17605_high_38
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_high_38 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37337842 - 37338063
Alignment:
| Q |
1 |
catgggtttggattcattgtctcggtgctcctccacttcattatgttgtcacttagattctttaaacatggcacttaagtcaaacaagtcttcttgtgat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37337842 |
catgggtttggattcattgtctcagtgctcctccacttcattatgttgtcacttagattctttaaacatggcacttaagtcaaacaagtcttcttgtgat |
37337941 |
T |
|
| Q |
101 |
accattgaaccaaaggctcataaagtgggaaatacagcaatgaaaagatttcaaaatgaaactttgttttcaaagtctgctaaacccatttcatatactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37337942 |
accattgaaccaaaggctcataaagtgggaaatacaacaatgaaaagatttcaaaatgaaactttgttttcaaagtctgctaaacccatttcagttactc |
37338041 |
T |
|
| Q |
201 |
acaacaaacatttgtctcctat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37338042 |
acaacaaacatttgtctcctat |
37338063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University