View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17605_high_5 (Length: 476)
Name: NF17605_high_5
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 3951580 - 3951116
Alignment:
| Q |
1 |
gttagatgttcttgcgaagattccatctggcaatgccttacttccataatgccagtattgctcctgaggaaataaaaatcaacagaagcagaatcagagg |
100 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3951580 |
gttagatgttcttgcgaaaattccatccggcaatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagagg |
3951481 |
T |
|
| Q |
101 |
caattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaagga |
200 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951480 |
caactctaagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaagga |
3951381 |
T |
|
| Q |
201 |
acgaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatg---gaa |
297 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
3951380 |
acaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattatatatatggaagaa |
3951281 |
T |
|
| Q |
298 |
ggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcgaaa |
397 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951280 |
ggtcacaaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcgaaa |
3951181 |
T |
|
| Q |
398 |
attttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatatt |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3951180 |
attttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatatt |
3951116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 4027315 - 4027646
Alignment:
| Q |
20 |
attccatctggcaatgccttacttccataatgccagtattgctcctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttggtaaaa |
119 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4027315 |
attccatatggcaatgccttacttccagaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaattctaagttgttaaaa |
4027414 |
T |
|
| Q |
120 |
ctcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaaggaacgaaatga--gtttactc |
217 |
Q |
| |
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|||||||||| ||| | || | | |||||| || |||||| || || || |||||||||||||||||||||| ||||||| | |||||| |||| ||| |
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| T |
4027415 |
ctcataaaagcttattagtcatagtccctctgacctacacatgaga--aatttttcaagtcccaattcttgacattaaggaccaaaatgatagtttgctc |
4027512 |
T |
|
| Q |
218 |
taatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatggaaggtcacaaaaaagtttttgt |
317 |
Q |
| |
|
|||| |||||| | ||| | |||||| |||||||||| | ||||| ||||| ||||||||||||| | ||||| ||||||||||||||| ||||| || |
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|
| T |
4027513 |
taatatctgcaaattaa-tatttagttctattatacaatgatttctacataa--gtgtgcaggacatagaatataaggaaggtcacaaaaaggttttggt |
4027609 |
T |
|
| Q |
318 |
cttactttacagctctaacaatatctacaaatataga |
354 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
4027610 |
cttacttcacagctcatacaatatctacaaatataga |
4027646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 4013016 - 4013193
Alignment:
| Q |
20 |
attccatctggcaatgccttacttccataatgccagtattgctcctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttggtaaaa |
119 |
Q |
| |
|
||||||| | |||||||||||||||| |||||| |||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4013016 |
attccatattgcaatgccttacttccggaatgcctgtattgtctctgacgaaatgaaaattaacagaagcagaatcagaggcaattctaagtcattaaaa |
4013115 |
T |
|
| Q |
120 |
ctcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaag |
198 |
Q |
| |
|
|||||||||| ||| | || | |||| ||| |||||||| ||||| | ||||||||||||||||| |||||||||| |
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|
| T |
4013116 |
ctcataaaagcttattagtcataatctctcaaagctacacatgtgagcattttttcaagtcccaattc-tgactttaag |
4013193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 4004602 - 4004715
Alignment:
| Q |
20 |
attccatctggcaatgccttacttccataatgccagtattgctcctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttggtaaaa |
119 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||||| |||||||||| |||| | ||||||||||||||| | ||||| ||||||| ||||| |
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|
| T |
4004602 |
attccatcttgcaatgccttacttccggaatgcctgtattgtctctgaggaaatgcaaataagcagaagcagaatcagggacaattttaagttgttaaaa |
4004701 |
T |
|
| Q |
120 |
ctcataaaagttta |
133 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
4004702 |
ctcataaatgttta |
4004715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 3990185 - 3990297
Alignment:
| Q |
20 |
attccatctggcaatgccttacttccataatgccagtattgctcctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttggtaaaa |
119 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||| || |||||| |||||||||| ||||||| |||| |||||||||| ||||||||||| || ||| | |
|
|
| T |
3990185 |
attccagctggaaatgccttacttccagaatccctgtattgtgtctgaggaaatgcaaatcaatagaaacagaatcagatgcaattctaag-tgttaaga |
3990283 |
T |
|
| Q |
120 |
ctcataaaagttta |
133 |
Q |
| |
|
|||||||||||||| |
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|
| T |
3990284 |
ctcataaaagttta |
3990297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
| Q |
295 |
gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact |
357 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4013305 |
gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact |
4013367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 462
Target Start/End: Original strand, 4215801 - 4215843
Alignment:
| Q |
420 |
cacaaatttgaaattgataagcagagtatttacagcatatatt |
462 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
4215801 |
cacaaattagaaattgataatcagagtatttacagcagatatt |
4215843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 3822214 - 3822265
Alignment:
| Q |
84 |
agaagcagaatcagaggcaat--tctaagttggtaaaactcataaaagttta |
133 |
Q |
| |
|
||||||||||||||||| ||| |||||| || ||||||||||||||||||| |
|
|
| T |
3822214 |
agaagcagaatcagaggtaatattctaagatgttaaaactcataaaagttta |
3822265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 462
Target Start/End: Original strand, 4005234 - 4005293
Alignment:
| Q |
402 |
tcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatatt |
462 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| || |||| ||||| | |||||||||||||| |
|
|
| T |
4005234 |
tcagcattaattcataac-acaaattcgaatttaataaacagagcaattacagcatatatt |
4005293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 423 - 462
Target Start/End: Original strand, 13400438 - 13400477
Alignment:
| Q |
423 |
aaatttgaaattgataagcagagtatttacagcatatatt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13400438 |
aaatttgaaattgataagcagagtatttacagcatatatt |
13400477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 13400176 - 13400278
Alignment:
| Q |
20 |
attccatctggcaatgccttacttccataatgccagtattgctcctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttggtaaaa |
119 |
Q |
| |
|
||||||| ||||||||||||| || || |||||| |||||| |||||||||| |||| ||||||||| ||| |||||||| | ||||||| || || |
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|
| T |
13400176 |
attccatatggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaaatataagttgttataa |
13400275 |
T |
|
| Q |
120 |
ctc |
122 |
Q |
| |
|
||| |
|
|
| T |
13400276 |
ctc |
13400278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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